PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G31630.6
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 238aa    MW: 27155 Da    PI: 7.2156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G31630.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-084352055
                     HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +e LrellP+     ++K +Ka+ L +++eYI+ Lq
  OGLUM02G31630.6  4 LEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 35
                     789*******8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.15134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-9444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-6439No hitNo description
Gene3DG3DSA:4.10.280.105.1E-12547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKTLEILREL LPHTDQKRDK ASFLSEVIEY IRFLQEKVQK YEEADPERNH EDSKSMPWAK  60
VYYRSCWRNT KNTSQVQGED LSPSTQDMNN EQYGPKHISA AQPALFNTQS VTSTTTSSSH  120
MATGTPQNLE KNSTPSNQPP WLSMSTMRQE SEPGNKMPNK HEKQTLHDEN HSISSAYSQG  180
LFNRLTEALK KSGLDPSQAN IAVEINLAKR ARDNTSDNSK INEDEEPIQI TKRRCNKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682280.0AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627558.11e-175transcription factor BIM2
RefseqXP_015627559.11e-175transcription factor BIM2
RefseqXP_015627560.11e-175transcription factor BIM2
TrEMBLA0A0D3F9Z21e-177A0A0D3F9Z2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YXP31e-177A0A0D9YXP3_9ORYZ; Uncharacterized protein
STRINGORUFI02G32620.11e-160(Oryza rufipogon)
STRINGONIVA02G34070.41e-160(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-24BES1-interacting Myc-like protein 2