PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G30650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 119aa MW: 13246.2 Da PI: 8.2892 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 39.7 | 1.4e-12 | 16 | 56 | 60 | 100 |
DUF260 60 slvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lvyeA+ r+rdPvyG+vg i+ +q+q++ql+ +la+++ e OGLUM02G30650.1 16 RLVYEANDRMRDPVYGCVGAISFMQNQVSQLQMQLAVAQGE 56 69**********************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.3E-9 | 17 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MCSGSPCASC KLLRRRLVYE ANDRMRDPVY GCVGAISFMQ NQVSQLQMQL AVAQGEILCI 60 QMQHRDGNEN EKNLRDLGCT FSTSCGPSRS VAGQAERFGG LQFIMGRNHF WASIWPIGI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004165 | 2e-82 | AP004165.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1479_B12. | |||
GenBank | AP014958 | 2e-82 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624534.1 | 2e-38 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 6e-23 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0D9YXB0 | 1e-83 | A0A0D9YXB0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G30650.1 | 2e-84 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-25 | LBD family protein |
Publications ? help Back to Top | |||
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