 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OGLUM02G29200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 419aa MW: 44405.1 Da PI: 6.7746 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM02G29200.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 33.9 | 5.8e-11 | 88 | 182 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............................................TTS-STCHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.........................................kapskKlsKaeiLekAveYIks 53
+r++h ++Er+RR+++N+ ++ Lr+l+P+++ +a + a+i+ A+e++k+
OGLUM02G29200.1 88 QRMTHIAVERNRRRQMNEYLAVLRSLMPEPYvqrqtdiascqskkamseqparrtamreclaerdspamaplSAITHGGDQASIVGGAIEFVKE 181
79***************************76688888887777777777777777777777777777777644333336667777777777666 PP
H CS
HLH 54 L 54
L
OGLUM02G29200.1 182 L 182
6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MSTLVDALCA PCSDTALIYD TFNASAAASF LFDNAAAFCD ADILGATATG EKEATSSAAA 60
AAADAAPPRK KRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAVL RSLMPEPYVQ 120
RQTDIASCQS KKAMSEQPAR RTAMRECLAE RDSPAMAPLS AITHGGDQAS IVGGAIEFVK 180
ELEQQLQSLE AQKRTLLPHH KARCDDATPM HNASGSNVGA GGCMEPTTTT SNCSSSVTED 240
APSADAPPFA QFFAYPQYVW CHSPRDSTTT TTAASASASA SASSSSPATV AAALQSEHRS 300
GLADIEVSLV ETHASVRVMS PRRPGQLLKM IAGLQALRLT VLHLNVTTLD SLVLYTLSVK 360
VEEGCSLTTV DDIAAAVHHV LCIVDAEAAA SEHLLAAGQL ATTATAAAVA KRKLATYMY
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 68 | 74 | RKKRRRR |
| 2 | 69 | 74 | KKRRRR |
| 3 | 88 | 99 | RMTHIAVERNRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CT830294 | 0.0 | CT830294.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA020A14, full insert sequence. |
