PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM02G26410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 608aa MW: 65655.8 Da PI: 4.6643 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.3 | 2.4e-29 | 68 | 152 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s +++f+qlea OGLUM02G26410.1 68 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 152 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 108 | 6.1e-34 | 375 | 460 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r e+ee++++ k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a OGLUM02G26410.1 375 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 460 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.22 | 65 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.95E-27 | 67 | 132 | No hit | No description |
Pfam | PF13837 | 5.4E-21 | 67 | 153 | No hit | No description |
PROSITE profile | PS50090 | 7.085 | 67 | 125 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.0E-5 | 372 | 434 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-5 | 374 | 431 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.851 | 374 | 432 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.2E-5 | 374 | 442 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.02E-26 | 374 | 439 | No hit | No description |
Pfam | PF13837 | 2.4E-22 | 375 | 461 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 608 aa Download sequence Send to blast |
MAAAFDLPPV TTPAPAAPSD VLLPTQPQVS GPEEFPAAAV NSNDDDMMMV DDVVVAGGVG 60 GSGSTGNRWP REETLALIRI RSEMDAAFRN ATLKAPVWEE LSRRLAELGY QRSGKKCKEK 120 FENVDKYYKR TKEGRTGRQD GKSYRFFSQL EALHAAAPPP PPQQRQGMPV EDPQPLAMAR 180 MMLPGAADLG FLSMSSESES DDESDEEEEE EEAVAPGGGG REGLGDDGDG DGEGGSSTRK 240 LMAMFEGMMR QVTEKQDAMQ RVFLETLEKW EAERTEREEA WRRKEVARIN REREQLSKER 300 AAAASRDAAL IAFLQRVGGA GGEPVRLSPS SAGATRHDAA AAGLQLVPVP APRAKAEDAW 360 AAAGGDGSGT TAPSRWPKEE VQALIDLRME KEEQYNDMGP KGPLWEEIAA GMQRIGYNRS 420 AKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLDA IYRKKHFAGR GGGGGGVTIA 480 ASHSSLAIVT VSEQDNPSQR ELEGKSSNDV GNVQLAVPLL VHNAPYKKVE GSEGEPNVTA 540 AAEETDSDEM GGEYTDDGDD GDKMQYKIEF QKPTAGGGGD GNDAPVPATT AAATSSAPTS 600 NTSFLAVQ |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK111742 | 0.0 | AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878530.1 | 0.0 | trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A0D9YVP0 | 0.0 | A0A0D9YVP0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G26410.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76890.2 | 3e-46 | Trihelix family protein |