PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G22030.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 374aa MW: 40355.5 Da PI: 7.2026

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G22030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172	1.9e-53	38	164	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL +k+++ +++++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ OGLUM02G22030.1 38 LPPGFRFHPTDEELITHYLLRKAADPAGFAARAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR 131 79*******************9999666689***********988899************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grap+g kt Wvmheyr+ OGLUM02G22030.1 132 -GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 164 .99***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-65	26	187	IPR003441	NAC domain
PROSITE profile	PS51005	59.693	38	187	IPR003441	NAC domain
Pfam	PF02365	2.9E-29	39	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MRLARQQQQQ VVVAATMEHD VHHHRQMMQQ QQQQEMDLPP GFRFHPTDEE LITHYLLRKA 60 ADPAGFAARA VGEADLNKCE PWDLPSRATM GEKEWYFFCV KDRKYPTGLR TNRATESGYW 120 KATGKDREIF RGKALVGMKK TLVFYTGRAP RGGKTGWVMH EYRIHGKHAA ANSKQDQEWV 180 LCRVFKKSLE LAAAAAAAGR RGAGAGTDVG PSSMPMADDV VGLAPCALPP LMDVSGGGGG 240 AGTASLSATA GAAAAPPPAH VTCFSNALEG QFLDTPYLLP AADPADHLAM SSASPFLEAL 300 QMQYVQDAAA AGGAGMVHEL LMGGGWYCNK GERERLSGAS QDTGLTSSEV NPGEISSSSR 360 QQRMDHHDAS LWAY

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MRLARQQQQQ VVVAATMEHD VHHHRQMMQQ QQQQEMDLPP GFRFHPTDEE LITHYLLRKA  60
ADPAGFAARA VGEADLNKCE PWDLPSRATM GEKEWYFFCV KDRKYPTGLR TNRATESGYW  120
KATGKDREIF RGKALVGMKK TLVFYTGRAP RGGKTGWVMH EYRIHGKHAA ANSKQDQEWV  180
LCRVFKKSLE LAAAAAAAGR RGAGAGTDVG PSSMPMADDV VGLAPCALPP LMDVSGGGGG  240
AGTASLSATA GAAAAPPPAH VTCFSNALEG QFLDTPYLLP AADPADHLAM SSASPFLEAL  300
QMQYVQDAAA AGGAGMVHEL LMGGGWYCNK GERERLSGAS QDTGLTSSEV NPGEISSSSR  360
QQRMDHHDAS LWAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	24	187	3	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	24	187	3	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	24	187	3	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	24	187	3	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-55	24	187	3	165	NAC domain-containing protein 19
4dul_B	2e-55	24	187	3	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028180	0.0	AB028180.1 Oryza sativa mRNA for OsNAC1 protein, complete cds.
GenBank	CT834765	0.0	CT834765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623389.1	0.0	NAC domain-containing protein 92 isoform X1
Swissprot	Q9FLJ2	9e-89	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D9YU29	0.0	A0A0D9YU29_9ORYZ; Uncharacterized protein
STRING	OGLUM02G22030.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	4e-85	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]