PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G19970.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 379aa    MW: 42547.6 Da    PI: 8.8175
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G19970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.21.6e-2964153190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+
  OGLUM02G19970.1  64 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHPLF 153
                      6*******************************************999.**********************9999***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2664153IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.75479153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSSPSPEPPP NPTPVPPPPP PAPSGNTAVE DSEAGPCIPR VQAATGDYTP WLGQEFASEH  60
EAYEFYRYYA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR EGFKAPDKRT NHTRTPQPDT  120
RTGCHANLVI RRKNDTSKYE VYAFEAQHNH PLFIPSCANP LQRKLSDVQS SDADNSGSEF  180
KACINDYEEE VELFTAWEAM ISKYNLHSNR RKKKGRNAKS QRKSCIEKGL QKTKKVQPEQ  240
SPIQYTMLDA TQPGNVLFQG LDISNPFPMG QLNYGGVQPQ PGLCPSLPTV SRELGFAAYL  300
SQPSSNSQHN QQKSTALLKV IVHICFNLQY NSWDRTGPVE DQINFSNSYQ SVIEATKNSH  360
LPGYIHQQHV HAMLRSTTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667980.0AK066798.1 Oryza sativa Japonica Group cDNA clone:J013075G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627310.11e-103protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_015627311.11e-103protein FAR1-RELATED SEQUENCE 7 isoform X2
TrEMBLA0A0D9YTC80.0A0A0D9YTC8_9ORYZ; Uncharacterized protein
STRINGOGLUM02G19970.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15895914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-21FAR1 family protein