PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G18450.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 380aa    MW: 40311.4 Da    PI: 5.0109
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G18450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.22.6e-2428140186
         trihelix   1 rWtkqevlaLiearremeerlrrgk...........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                      rWt+qe+l+Lie++r +e r + +                            + +p+W++v++++r++g+er+++qC+++w+nl+++ykkike+
  OGLUM02G18450.1  28 RWTRQEILVLIEGKRMVEGRGGGRGgrgraaaaaaaaaaaaaggsggeaavaALEPKWAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIKEW 121
                      8**************999988843224557778888999999999999999888**************************************** PP

         trihelix  68 ekkrtsessstcpyfdqle 86 
                      e+  ++ +  + p f  ++
  OGLUM02G18450.1 122 ERAAAAAAPPREPSFWAMR 140
                      ***9988888889998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-52840IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-578111IPR009057Homeodomain-like
PfamPF138371.0E-883124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSTAGHPAAA AAAAAAATPS GRAPRLPRWT RQEILVLIEG KRMVEGRGGG RGGRGRAAAA  60
AAAAAAAAAG GSGGEAAVAA LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKE  120
WERAAAAAAP PREPSFWAMR NDARRERRLP GFFDREVYDI LDGRGRGTLV APSGGGNAAA  180
GEEEPARAAA EVEVEVEEEE ETGKTRARAE ETVFDSGRPA AEESLFSDDE EEEDDDEAPP  240
ATAAAVAATA QAPPRAVIAL PISGTSKDKQ PEQQAASRGT PPPPPPTTQQ QQQQQQQQGG  300
QKRRRADDDD EEEDDGRRGG ELQSKLVEIL DRSSRMVAAQ LEAQNANSRL DREQRRDQAA  360
SLAVVLGRLA DALGRIADKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054970.0AP005497.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0071O21.
GenBankAP0072530.0AP007253.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0004O05.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCT8354750.0CT835475.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038B06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623609.11e-139trihelix transcription factor ASR3
TrEMBLA0A0D9YSU60.0A0A0D9YSU6_9ORYZ; Uncharacterized protein
STRINGOGLUM02G18450.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-44Trihelix family protein