PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G12410.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 510aa    MW: 57469.3 Da    PI: 3.7957
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G12410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM483.9e-15111441127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevd..iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                      l pGf+F+P+d+ lv  +L + + + +l++     +++ +   + + Pw L  ++ +++e+e yf ++       g r+ r ++  g W ++ +
  OGLUM02G12410.1  11 LSPGFKFNPSDQMLVELFLLPYLIDGELPVCGLvfVEDDHlgGLPLPPWILLdRHGRGDEDEAYFVAPMGA--GDGARQVRsVAGGGKWVKQRS 102
                      579*******************9999977755432443331156689****73444445558888887765..56889999788899**97765 PP

              NAM  89 ..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                        + ev+++  +++  + k +L f+  ++++  +t Wvmhey 
  OGLUM02G12410.1 103 egKGEVVVApgGEAFLWEKFSLNFHCDDRRS-GSTGWVMHEYI 144
                      223344444455566999*******666655.59********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-254154IPR003441NAC domain
PROSITE profilePS5100522.00911165IPR003441NAC domain
PfamPF023657.9E-1213144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAAAAARSQG LSPGFKFNPS DQMLVELFLL PYLIDGELPV CGLVFVEDDH LGGLPLPPWI  60
LLDRHGRGDE DEAYFVAPMG AGDGARQVRS VAGGGKWVKQ RSEGKGEVVV APGGEAFLWE  120
KFSLNFHCDD RRSGSTGWVM HEYIVSPPAG SAVAASHRAT HITFTGHGQN RKRVPDGYVL  180
VLDDAAAAPP SESEQSNQEE QEYAPPPESE QSNQEEQEYA ACTDQIQQQC FVPEQQMSNQ  240
DYFPAAAAAE QSNQQFFVPA EEQRSHQLFL PAEEQSSQQF FMPAEEQSSH QFLPAEEQSS  300
HQFLPAEEQS NYQQFLPALE QMTQSNQEFA YGEQSQCYIV PEQQQLSNQE YAYSEQSQCY  360
ILPEQQQLSD QEYAYSEQSQ CYILPEQQEL SNQEAEYAFV CYDEQQQQSN QEAEYAFACY  420
DEQQQQQQYL HGDLTSWQEP LVTSSSSSSQ QFLGQEQLLP DGLLLDGFGE ISQQQGDQEY  480
AYCEESQCYI MPEQQQQSNQ EAEFAFACYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040010.0AP004001.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_D03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9YQJ90.0A0A0D9YQJ9_9ORYZ; Uncharacterized protein
STRINGOGLUM02G12410.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-08NAC domain containing protein 47