PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G07240.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 418aa    MW: 44421 Da    PI: 10.0804
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G07240.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353e-11185223341
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                      + k  rr+++NReAAr+sR+RKka+i++Le+    L++ 
  OGLUM02G07240.2 185 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQL 223
                      67999*************************865555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-8182227No hitNo description
SMARTSM003382.9E-8183246IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.036185230IPR004827Basic-leucine zipper domain
PfamPF001701.4E-8186225IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-7187230No hitNo description
PROSITE patternPS000360190205IPR004827Basic-leucine zipper domain
PfamPF141442.9E-27272352IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGDRPWQQQL QPHDQQAASC SVTAGMMMQA SATSSSIHGN NIIRKDPGGG YDMADLDHIF  60
LYLNSQDQAS AAIQEQPQTL NIFPSQPMHA GEPSPKGSSS MAAINSAPSN NALAIAAGSS  120
KRPPAAAAAG GQPSRLNNPA DQPSASGKDG KAAVVKKEGG GGGGKHHGGA SSAAASEHEG  180
PKTPDAKTLR RLAQNREAAR KSRLRKKAYI QNLETSRIRL SQLEQELVQR SRTQGAILGG  240
GAFSAGIGGQ SPEAAWFDGE YARWVESHER MMAHMRAAVE EQPQHGGVAA AAAEAQLRQL  300
VDAAVAHHGV LVELKAAVAS ADVFHLVSGT WLPAAERCFL WIGGFRPSEL IKADALRLQT  360
LYKLPQILTA RQSARCFLAI ADHSHRLRAL TSLWLSRPRH PDQPTPPPPP PPPINPRN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041841e-168AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBankAP0149581e-168AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-168CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626935.10.0transcription factor TGAL9-like isoform X1
SwissprotQ0E3420.0TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBLA0A0D9YNP50.0A0A0D9YNP5_9ORYZ; Uncharacterized protein
STRINGORGLA02G0067600.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.16e-52bZIP family protein
Publications ? help Back to Top
  1. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]