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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G05810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 478aa MW: 50406.2 Da PI: 7.0133 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73.9 | 2.8e-23 | 196 | 244 | 1 | 49 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cq+egC+adls ak+yhrrhkvC++h+ka++vl++g++qrfCqqCsr OGLUM02G05810.1 196 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRL 244 6***********************************************7 PP | |||||||
2 | SBP | 46.6 | 8.9e-15 | 265 | 295 | 47 | 77 |
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 +rfh l efDe+krsCr+rL +hn+rrrk++ OGLUM02G05810.1 265 ARFHVLAEFDEAKRSCRKRLTEHNRRRRKPT 295 7****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-30 | 190 | 281 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 26.384 | 194 | 294 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.85E-30 | 195 | 296 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.5E-18 | 197 | 247 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.6E-8 | 265 | 293 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MAVPAAAVAA DVVDFGYAAP MPPPYVGFDP AGMGGERQLF QHGGACHGLY DGGLDFSAAA 60 AFQEAATLGV GLPGGNLLQS LAPPAAAAAT PSSLQMPMMM SLPGLPATAA DVYPFGGGGF 120 VKREDGPVLD VVGGGGGGRI GLNLGRRTYF SPADVLAVDR LLLRSRLGGM GMEMGMGMGV 180 LGLGLAAAAH HHQPPRCQAE GCKADLSAAK HYHRRHKVCD FHAKAAAVLA AGKQQRFCQQ 240 CSRLAPIPRN HVAARWDPAG TRVSARFHVL AEFDEAKRSC RKRLTEHNRR RRKPTAGGQS 300 SKDSPPPPPS KKGTDASIAS SYTSCDHHKA AASTTTASGV SCLQELADHH DVGGGHQAAM 360 AAPPPPTLSL AALPPQEEDD EDEDGGLGTV LMMQQHHQRR RLQHDGDGDD DVAAHHHLMR 420 SLARQQQQHR HSSGCSNNND GDDDDHNNNN NILSCSSASD QQNSSNNNNM HFFEVDFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-23 | 197 | 293 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 293 | KRSCRKRLTEHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004838 | 0.0 | AP004838.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0504A05. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878835.1 | 0.0 | squamosa promoter-binding-like protein 5 isoform X1 | ||||
Swissprot | Q0E3F8 | 0.0 | SPL5_ORYSJ; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A0D9YN60 | 0.0 | A0A0D9YN60_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G05810.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2375 | 35 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-28 | squamosa promoter binding protein-like 8 |