PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G05620.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 285aa    MW: 30108.4 Da    PI: 5.148
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G05620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.61e-16130181458
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                      +kr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN +L k   +l++  ++
  OGLUM02G05620.1 130 VKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFK---QLTDANQQ 181
                      79**************************************9995...55555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.9E-18127191IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174129181IPR004827Basic-leucine zipper domain
PfamPF001703.7E-14130179IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.73E-13130182No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-13131182No hitNo description
CDDcd147021.84E-23132182No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKKCPSELDI VAFIHGGSGG GDADADHPLG IFSAADLSGF GFADSSTITG GIPNHIWPQS  60
QNLNARHPAV STTIESQSSI CAAASPTSAT NLNMKESQTL GGTSGSDSES ESLLDIEGGP  120
CEQSTNPLDV KRVRRMVSNR ESARRSRKRK QAHLADLESQ VDQLRGENAS LFKQLTDANQ  180
QFTTSVTDNR ILKSDVEALR VKVKMAEDMV ARGALSCGLG HLGGLSPALN PRQACRVPDV  240
LAGLDYAGDD PFTAGLSPPE QLQMPGGEVV DAWGWDNHPN GGMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149RRSRKRK
2143150RRSRKRKQ
3145150SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534730.0AB053473.1 Oryza sativa mRNA for RISBZ4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623252.10.0bZIP transcription factor RISBZ4-like isoform X1
SwissprotQ6H5000.0RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A0D9YN270.0A0A0D9YN27_9ORYZ; Uncharacterized protein
STRINGOGLUM02G05620.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-37basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]