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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G03280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 1077aa MW: 119585 Da PI: 6.6625 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.9 | 5.9e-21 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+ ++ OGLUM02G03280.1 149 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV--RD 238 99*****************************954.4444.49**********************************************99..55 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ OGLUM02G03280.1 239 EKHQLLLGIRRA 250 788889999997 PP | |||||||
2 | Auxin_resp | 117.7 | 9.8e-39 | 275 | 358 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ OGLUM02G03280.1 275 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 358 79*********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 33 | No hit | No description |
SuperFamily | SSF101936 | 1.24E-41 | 138 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-39 | 141 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.46E-18 | 148 | 249 | No hit | No description |
Pfam | PF02362 | 1.0E-18 | 149 | 250 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.912 | 149 | 251 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.7E-21 | 149 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-33 | 275 | 358 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 25.383 | 1009 | 1077 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1077 aa Download sequence Send to blast |
MASMKQQQTP ASSAVTAAAA AASSSATAAV AACEGERKAA AINSELWHAC AGPLVSLPPV 60 GSLVVYFPQG HSEQVAASMQ KDVDAHVPSY PNLPSKLICL LHGVNLHADP DTDEVYAQMT 120 LQPVNTYGKE ALQLSELALK QARPQMEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF 180 SMQPPAQELQ ARDIHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIVVRDEK 240 HQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHAAA NSSPFTIFYN PRASPTEFVI 300 PFAKYQKALY SNQISLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG 360 WDESAAGERR NRVSIWEIEP VAAPFFLCPQ PFFGVKRPRQ LDDESEMENL FKRAMPWLGE 420 EVCIKDTQNQ NSTAPGLSLV QWMNMNRQQS SSLANTAAQS EYLQALGNPA VQNLAADELA 480 RQLYVQNNLL QQNCIQFNSP KLPQQMQTMN DLSKAAIPLN QLGAIINPQD QKQDAVNHQR 540 QQNSIQVIPL SQAQSNLVQA QVIIQNQMQQ QKPSPTQNPQ RINGQRLLLS HQQQDQNLQL 600 QQQLLLQQKQ QLQQQQQQQQ NQQQLNKSLG QLVNLASQQS KLFDEELQLQ ILQKLQQQSL 660 MSQSTSTLSQ PPLIQEQQKL ITDMQKQLSN SHSLAQQQMM PQQEIKPSLQ ATPLLPTVQQ 720 EQQQKLLQKQ VSLADVSGVA FQPISSTNVI PTTGGAMIIS GATQSVVTEE MPSCSTSPST 780 ANGNHFTQST KNRHCINTER LPPSTAPMLI PTSIDAVIAT PLMTKELPKP NNNVKQSVVN 840 SKLPNVAPGP QNCINNALQT DNLETSSSAT SLCPSRTDGL VHQGFPSSNF NQHQMFKDAL 900 PDVEMEGVDP SNSGLFGINN DNLLGFPIET EDLLINALDS VKYQNHISTD VENNYPMQKD 960 ALQEISTSMV SQSFGQSDMA FNSIDSTIND GAFLNKNSWP TAPLLQRMRT FTKVYKRGAV 1020 GRSIDIGRYS GYEELKHALA RMFGIEGQLE DRQRIGWKLV YKDHEDDILL LGDDPWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-167 | 35 | 379 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005294 | 0.0 | AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627049.1 | 0.0 | auxin response factor 5 isoform X1 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A0D9YM67 | 0.0 | A0A0D9YM67_9ORYZ; Auxin response factor | ||||
STRING | OGLUM02G03280.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |