PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G00360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 705aa MW: 74654.6 Da PI: 6.2999 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 100.7 | 1.2e-31 | 526 | 610 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r+ +e+r+++ lk+plWeevs++m++ g++r++k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+ OGLUM02G00360.1 526 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 610 8********************************************************************98.99999*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.073 | 519 | 583 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.86E-30 | 525 | 590 | No hit | No description |
Pfam | PF13837 | 3.6E-23 | 525 | 612 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MQSGYGGVSE FQQYIMDPGA FAMSAPPQPA QAAAAAAAAA AAAAGGQELG APFRYQPLHH 60 HALPQHHHHH HPPPQMPPHL AHFGGAGGIP FTQQLLHQAA AAGHHPHLQL FHEQHHHQKH 120 QQQPPPPARW APQHHHHHHP HHHLGLDVEA AVPESSGAGA GSAASGAAAP PGVPPFLAAA 180 MSFKLGVDGG GGSGATGGTD DALNDGGGAG SGMMLHGGGG GGGGGGDDEA ATESRLRRWP 240 GDEETSIKEP TWRPLDIDYI HSSSSSKRAP PKDKPATPDS PAPPPPANYF KNKPDDNAAA 300 ASAASAGAVN YKLFSELEAI YKPGNGGAQT GSGSGLTGDD NAMLAPPMAD LPDAAAADPP 360 HLNTSETSAG EDAHAVVQPQ PQTQQPSGAD AARRKRKRRR QEQLSASASF FERLVQRLME 420 HQESLHRQFL DTMERRERER AARDEAWRRQ EADKFAREAA ARAQDRASAA ARESAIIAYL 480 EKISGETITL PPPAANPAPG ADEQDGVGKE VVAYDGEGSL QLSSSRWPKH EVEALIRVRT 540 GLEDRFQEPG LKGPLWEEVS ARMAAAGYRR NAKRCKEKWE NINKYFRKAK ESGKKRPAHA 600 KTCPYFDELD RLYSRSGSGG GGGSSSAGGN GGEEAKGSSE LLDAVVKYPD VRCAPPGFPF 660 DGEQNEEGRT KDDGDGDGDE EDVRVGVGRA TDDHDDQVDE SHDDH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 392 | 397 | RRKRKR |
2 | 393 | 398 | RKRKRR |
3 | 393 | 399 | RKRKRRR |
4 | 394 | 399 | KRKRRR |
5 | 395 | 399 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00651 | PBM | Transfer from LOC_Os02g01380 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879174.1 | 0.0 | trihelix transcription factor GTL1 | ||||
TrEMBL | A0A0D9YL22 | 0.0 | A0A0D9YL22_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G00360.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6399 | 35 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 4e-39 | Trihelix family protein |