PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G00360.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 705aa    MW: 74654.6 Da    PI: 6.2999
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G00360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.71.2e-31526610186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k+ev aLi++r+ +e+r+++  lk+plWeevs++m++ g++r++k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  OGLUM02G00360.1 526 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 610
                      8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.073519583IPR017877Myb-like domain
CDDcd122031.86E-30525590No hitNo description
PfamPF138373.6E-23525612No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MQSGYGGVSE FQQYIMDPGA FAMSAPPQPA QAAAAAAAAA AAAAGGQELG APFRYQPLHH  60
HALPQHHHHH HPPPQMPPHL AHFGGAGGIP FTQQLLHQAA AAGHHPHLQL FHEQHHHQKH  120
QQQPPPPARW APQHHHHHHP HHHLGLDVEA AVPESSGAGA GSAASGAAAP PGVPPFLAAA  180
MSFKLGVDGG GGSGATGGTD DALNDGGGAG SGMMLHGGGG GGGGGGDDEA ATESRLRRWP  240
GDEETSIKEP TWRPLDIDYI HSSSSSKRAP PKDKPATPDS PAPPPPANYF KNKPDDNAAA  300
ASAASAGAVN YKLFSELEAI YKPGNGGAQT GSGSGLTGDD NAMLAPPMAD LPDAAAADPP  360
HLNTSETSAG EDAHAVVQPQ PQTQQPSGAD AARRKRKRRR QEQLSASASF FERLVQRLME  420
HQESLHRQFL DTMERRERER AARDEAWRRQ EADKFAREAA ARAQDRASAA ARESAIIAYL  480
EKISGETITL PPPAANPAPG ADEQDGVGKE VVAYDGEGSL QLSSSRWPKH EVEALIRVRT  540
GLEDRFQEPG LKGPLWEEVS ARMAAAGYRR NAKRCKEKWE NINKYFRKAK ESGKKRPAHA  600
KTCPYFDELD RLYSRSGSGG GGGSSSAGGN GGEEAKGSSE LLDAVVKYPD VRCAPPGFPF  660
DGEQNEEGRT KDDGDGDGDE EDVRVGVGRA TDDHDDQVDE SHDDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392397RRKRKR
2393398RKRKRR
3393399RKRKRRR
4394399KRKRRR
5395399RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879174.10.0trihelix transcription factor GTL1
TrEMBLA0A0D9YL220.0A0A0D9YL22_9ORYZ; Uncharacterized protein
STRINGOGLUM02G00360.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-39Trihelix family protein