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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G48010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 150aa MW: 16874.1 Da PI: 6.7712 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.5 | 5.3e-10 | 17 | 79 | 4 | 65 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrd 65 G+ F+Pt++el+ ++L+++++g +++ ++ e+d + + Pw+L +++ +e+ + y F r OGLUM01G48010.1 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLARHGRREEGInYCFYVRG 79 999*********************9**999**************8665555554456665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-20 | 5 | 122 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-4 | 17 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MGKEMNLIRE DEYGGGGVGF EPTEDELMLH FLRPQLRGFA PRVAGAVVEA DPCGAAPWEL 60 LARHGRREEG INYCFYVRGE MGQQRSTGWM MAEYEITDPR CYRRADDGEE DDFWVLCHVR 120 KSSRPSAAKI SPAKPARRRK PTAAADVRAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-111 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641921.1 | 1e-83 | NAC domain-containing protein 48-like isoform X1 | ||||
Refseq | XP_015641928.1 | 1e-83 | NAC domain-containing protein 48-like isoform X2 | ||||
TrEMBL | A0A0D9YJY5 | 1e-106 | A0A0D9YJY5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G48010.1 | 1e-107 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 |