PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G42400.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 173aa    MW: 19278.5 Da    PI: 9.0793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G42400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-081563147
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     r +W++ Ed+ +  a  + + +   +W+++a+ ++ gRt+ +  +++q +
  OGLUM01G42400.1 15 RRPWSKVEDKVFESALVMCPEDvpgRWALVAAQLP-GRTPQEALEHYQVL 63
                     679********************************.******99999976 PP
2Myb_DNA-binding41.33.6e-13106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ l++++  ++G g+W+ I+r    +Rt+ q+ s+ qky
  OGLUM01G42400.1 106 PWSEDEHRLFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKY 150
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.3341068IPR017930Myb domain
SuperFamilySSF466896.89E-111263IPR009057Homeodomain-like
SMARTSM007173.7E-61466IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-61562IPR009057Homeodomain-like
PfamPF002491.7E-61562IPR001005SANT/Myb domain
CDDcd001671.33E-51764No hitNo description
PROSITE profilePS5129418.86699155IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-10100156IPR009057Homeodomain-like
SuperFamilySSF466895.02E-17101155IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16103154IPR006447Myb domain, plants
SMARTSM007173.3E-10103153IPR001005SANT/Myb domain
PfamPF002498.9E-11106150IPR001005SANT/Myb domain
CDDcd001674.83E-10106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDLYGAAAGG GPVARRPWSK VEDKVFESAL VMCPEDVPGR WALVAAQLPG RTPQEALEHY  60
QVLVADIDLI MRGAVDAPGS WDDNDGNDRR GGGGKPRGEE RRRGVPWSED EHRLFLEGLD  120
RYGRGDWRNI SRFSVRTRTP TQVASHAQKY FIRQANAGAR DSKRKSIHDI TTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1516105990RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2628330.0KM262833.1 Oryza sativa Indica Group cultivar Nagina 22 MYB transcription factor (MYB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622460.11e-123transcription factor DIVARICATA
SwissprotQ8S9H75e-48DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D9YHT51e-123A0A0D9YHT5_9ORYZ; Uncharacterized protein
STRINGOGLUM01G42400.11e-124(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-43MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]