PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 590aa MW: 64405.4 Da PI: 8.2673

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G40780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2.1e-18	67	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l OGLUM01G40780.1 67 KGGWTPEEDETLRKAVEAYKGRNWKKIAECFP-YRTEVQCLHRWQKVL 113 688***************************.**********986 PP
2	Myb_DNA-binding	62	1.2e-19	119	165	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++d+vk++G+ W+ Ia+ ++ gR +kqc++rw+++l OGLUM01G40780.1 119 KGPWTQEEDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 165 79****************************.***********97 PP
3	Myb_DNA-binding	60.3	4.1e-19	171	214	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ OGLUM01G40780.1 171 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 214 679*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.09	62	113	IPR017930	Myb domain
SMART	SM00717	9.8E-17	66	115	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-16	67	113	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.56E-16	68	123	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-24	69	129	IPR009057	Homeodomain-like
CDD	cd00167	5.50E-15	70	113	No hit	No description
PROSITE profile	PS51294	31.757	114	169	IPR017930	Myb domain
SuperFamily	SSF46689	3.67E-32	116	212	IPR009057	Homeodomain-like
SMART	SM00717	6.4E-19	118	167	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-18	119	165	IPR001005	SANT/Myb domain
CDD	cd00167	1.69E-16	121	165	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.9E-27	130	173	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.863	170	220	IPR017930	Myb domain
SMART	SM00717	5.3E-18	170	218	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-17	171	214	IPR001005	SANT/Myb domain
CDD	cd00167	1.98E-14	173	216	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-22	174	219	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGGGLA QMSPPVSSSA NSISGLRRTS 60 GPIRRAKGGW TPEEDETLRK AVEAYKGRNW KKIAECFPYR TEVQCLHRWQ KVLNPELIKG 120 PWTQEEDDQI IDLVKKYGPT KWSVIAKALP GRIGKQCRER WHNHLNPEIR KDAWTTEEEQ 180 ALINAHRIYG NKWAEIAKVL PGRTDNSIKN HWNSSLRKKQ DMYNTSNNLV VPKLLVHDKF 240 KDKPKLMAME GHLDLNKAPI INSKDQPGTA HRSNCSGFLS RSSLPTAQPL TSREASVVDG 300 SAVTLVAQGL ESDSVRGKGL EIDSVHEKGL EVNSAPDHTG NSWTIQLEAA PSKGEAELSL 360 KNEARSLGPL CYQIPNMEDV VPVSSSLFSD HLTGNHTSEH CGDDILSPAG CTTPPPTKGK 420 LTSQLSVDSI LKSAANSFPG TPSILKRRKR DKSTPVSASE MKISGSNTDR FYTPMGMEPA 480 TATPESFKTT SFLSLGSLDG SVKSFDVSPQ YRARSKRMAL TKTVEKQLDF SSDGLDTCGS 540 EILNSSCNNS QSTLSITEAP KLKEKEHAEH AVQLENLTKN FAHTTNLDVT

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGGGLA QMSPPVSSSA NSISGLRRTS  60
GPIRRAKGGW TPEEDETLRK AVEAYKGRNW KKIAECFPYR TEVQCLHRWQ KVLNPELIKG  120
PWTQEEDDQI IDLVKKYGPT KWSVIAKALP GRIGKQCRER WHNHLNPEIR KDAWTTEEEQ  180
ALINAHRIYG NKWAEIAKVL PGRTDNSIKN HWNSSLRKKQ DMYNTSNNLV VPKLLVHDKF  240
KDKPKLMAME GHLDLNKAPI INSKDQPGTA HRSNCSGFLS RSSLPTAQPL TSREASVVDG  300
SAVTLVAQGL ESDSVRGKGL EIDSVHEKGL EVNSAPDHTG NSWTIQLEAA PSKGEAELSL  360
KNEARSLGPL CYQIPNMEDV VPVSSSLFSD HLTGNHTSEH CGDDILSPAG CTTPPPTKGK  420
LTSQLSVDSI LKSAANSFPG TPSILKRRKR DKSTPVSASE MKISGSNTDR FYTPMGMEPA  480
TATPESFKTT SFLSLGSLDG SVKSFDVSPQ YRARSKRMAL TKTVEKQLDF SSDGLDTCGS  540
EILNSSCNNS QSTLSITEAP KLKEKEHAEH AVQLENLTKN FAHTTNLDVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	1e-71	66	219	5	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-71	66	219	5	158	MYB PROTO-ONCOGENE PROTEIN
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	446	451	RRKRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269\|PubMed:17293435, ECO:0000269\|PubMed:19279197}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00482	DAP	Transfer from AT5G02320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269\|PubMed:17293435}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ940212	0.0	FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616493.1	0.0	transcription factor MYB3R-2
Refseq	XP_015616500.1	0.0	transcription factor MYB3R-2
Swissprot	Q0JHU7	0.0	MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBL	A0A0D9YH51	0.0	A0A0D9YH51_9ORYZ; Uncharacterized protein
STRING	OGLUM01G40780.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3099	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-108	myb domain protein 3r-5

Publications ? help Back to Top
Kakar KU, et al. A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.). Plant Biol (Stuttg), 2016. 18(3): p. 471-83 [PMID:26681628]