PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G38810.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 343aa MW: 36753.2 Da PI: 10.1122

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G38810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.7	3.8e-16	273	323	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN +Lk + +el +++ OGLUM01G38810.1 273 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENVRLK-RQKELDELI 323 79***************************************9.666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-14	268	316	No hit	No description
SMART	SM00338	8.0E-11	269	341	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.392	271	316	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.94E-11	273	318	No hit	No description
CDD	cd14707	6.95E-25	273	327	No hit	No description
Pfam	PF00170	6.5E-13	273	316	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	276	291	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MGSQTMASKA GGGGVARRGG GRMRSLGRQG SMYSLTLDEV QSQLGEPLHS MNLDELLRSV 60 FPDGLAIADG AGAGAGATTS SQQHQPGSGL LRQGSITMPP ELSKKTVDEV WKGIQAAPKR 120 NAETGGGGGG RRRRERQPTL GEVTLEDFLV KAGVVTQGSL KELSDVGNVD PVGRGVTATG 180 TVDLAPGSHW IEQYKQQIAS TDAHHHGQQG VQGAYFPNRL VPQPLNVGPG AILEPSYSDG 240 QTSSGMIGGM SDSQTPGRKR GMSGDVADKL MERRQKRMIK NRESAARSRA RKQAYTNELE 300 NKVSRLEEEN VRLKRQKELD ELICAVPVPE PKYQLRRTSS ADF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MGSQTMASKA GGGGVARRGG GRMRSLGRQG SMYSLTLDEV QSQLGEPLHS MNLDELLRSV  60
FPDGLAIADG AGAGAGATTS SQQHQPGSGL LRQGSITMPP ELSKKTVDEV WKGIQAAPKR  120
NAETGGGGGG RRRRERQPTL GEVTLEDFLV KAGVVTQGSL KELSDVGNVD PVGRGVTATG  180
TVDLAPGSHW IEQYKQQIAS TDAHHHGQQG VQGAYFPNRL VPQPLNVGPG AILEPSYSDG  240
QTSSGMIGGM SDSQTPGRKR GMSGDVADKL MERRQKRMIK NRESAARSRA RKQAYTNELE  300
NKVSRLEEEN VRLKRQKELD ELICAVPVPE PKYQLRRTSS ADF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	136	GRRRRERQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627754.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	9e-82	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0D9YGC9	0.0	A0A0D9YGC9_9ORYZ; Uncharacterized protein
STRING	OGLUM01G38810.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-72	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]