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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G33070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 349aa MW: 38780.4 Da PI: 7.3026 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.2 | 1.4e-10 | 98 | 194 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.......sessstcpyfd 83 +W++ + aL++a ++ r +r++l++ W evs+ ++ + s +qC+++++ l+k+y+k+ke+++ + +s s++ yfd OGLUM01G33070.1 98 EWSEGSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAaaaaSRPPGYYSEQQCRNRIDTLRKKYRKEKERMRLAArrpdrpdRPSPSKWIYFD 191 5**********************************9997776444455799*******************998653111111134567888888 PP trihelix 84 qle 86 +++ OGLUM01G33070.1 192 KMQ 194 886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.8E-17 | 97 | 196 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGVTCPQTRR PIHLAEPPLS PEPNPSSPLM DDGAAPAAAA AAEFPSPSPS SSGASPSPLS 60 KRRRTDRYAQ GFEFAPRPAP ATATATAPAP TPARGTPEWS EGSTFALLDA WGDRFVRAGR 120 RSLRADEWLE VSRLAAAAAS RPPGYYSEQQ CRNRIDTLRK KYRKEKERMR LAARRPDRPD 180 RPSPSKWIYF DKMQSLMCPP PLPLQPPVVT RRRDTQPVPR QSWGLDAAEY VLGGCENAGT 240 RDSGSGAELG EEQPNEAGAG KGEDFELLVE SIRKLGDVYE RVESSKRQHM AEVERLRRDL 300 QRDLEVRRRE ILEKAQAEIA RLTEEDGEEG DLKEGEGDDN KRSLDFRLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 285 | 297 | KRQHMAEVERLRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623327.1 | 0.0 | uncharacterized protein LOC4324693 | ||||
TrEMBL | A0A0D9YE68 | 0.0 | A0A0D9YE68_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G33070.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8090 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 2e-16 | Trihelix family protein |