PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G32180.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 394aa    MW: 40353.7 Da    PI: 7.0573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G32180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.5e-06291331954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P  +      K++ a++L +A  Y+k L
  OGLUM01G32180.1 291 ARLRRERVSDRLRVLQKLVPGgN------KMDTASMLDEAASYLKFL 331
                      599*****************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.25E-10273336No hitNo description
PROSITE profilePS5088814.189282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13288341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-10291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
METFGWAGGG QLMHHDDIYL PRSVGCGRPF ELDDAFLGAC FGAQLQCDGG VGGGDGGGCL  60
QGTSGFGAVA GDPLGLLCSG DVFASVAEGA GGAHDDGLLD AALAFSRNQL GGAACDGSDG  120
GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GGGGGYDAEV VSPTSTMSAA TQSLHPKRKL  180
YDDHHHPAGI AAAAAAPPLA PCPRPTTGAV AAKRRASTSA TSITFGHQPH HHHAGATTAG  240
YEPDMEAMAQ VKEMIYRAAA MRPVHLGTEA AADKPRRKNV RISSDPQTVA ARLRRERVSD  300
RLRVLQKLVP GGNKMDTASM LDEAASYLKF LKSQVQKLET LGTTTTTSKL PQQYYSGNIN  360
NSNNHHGFLG FAANNSTISA GYANSNAGNA TKLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278DKPRRKN
2273278KPRRKN
3291296RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8312190.0CT831219.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI223P22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629328.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629344.10.0transcription factor LATE FLOWERING-like
TrEMBLA0A0D9YDV80.0A0A0D9YDV8_9ORYZ; Uncharacterized protein
STRINGOGLUM01G32180.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-34bHLH family protein