PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G22860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 443aa MW: 47947.4 Da PI: 6.4628 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 86.8 | 1.9e-27 | 286 | 335 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +edl++yF++pi++AA+e++v+lTvLK++CR++GI+RWPhRk+ksl OGLUM01G22860.1 286 DHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGIARWPHRKMKSL 335 6899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.621 | 275 | 355 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-21 | 288 | 335 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MEMHECCYYG GSIGGDGLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV 60 AGIGGACMTA DLVVRDEEME MAAGYLPVAA SAAAAADFDH YMYQQFQLEP DQFVSTLPAV 120 AVAVAATAGG GSHDDELLRM PFTDIDLDAF ADARDVVVGV GEPKPSPQHT LDAAIALPAV 180 GGGGAHHFGT QDDDVKFDVT KQRNDAALAG DDSLSMVIVE SYEMGMRRHA AEQEQEQKPK 240 IITPAATTLT PPPLPLPPPP PPPPRVTRSR RDGSSAATAG GKTRLDHIGF EDLRRYFYMP 300 ITKAAREMNV GLTVLKKRCR ELGIARWPHR KMKSLKSLIL NEMGSKGMSA AAMRRELEAL 360 ENCCALMERN PAVELTERTK KLRQACFKEN YKRRRAAAVD VLDLDHCFSF AAGHCHRHHH 420 QQLALPPPPA AAADHRRRDF FGY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003933 | 0.0 | AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06. | |||
GenBank | AP004258 | 0.0 | AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638205.1 | 0.0 | uncharacterized protein LOC107276829 | ||||
TrEMBL | A0A0D9YAE3 | 0.0 | A0A0D9YAE3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G22860.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12888 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 3e-31 | RWP-RK domain-containing protein |