PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G21120.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 251aa    MW: 26537.3 Da    PI: 8.2894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G21120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-06106149754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        Er RR+ +   ++eL  llP++     ++ s   i+e+A+ ++ +L
  OGLUM01G21120.1 106 VSERARRQTMSRLYAELGALLPNL----PPRASTTRIVEEAIACVGEL 149
                      67*********************6....389**********9887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.84999149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-8101159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-4103152No hitNo description
SMARTSM003530.0079105155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-6106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDTSNCRPGL ERLRCSATNN CPQVHNRKAD TIAPSVLQPQ HKEQSFVPSR DDKITAPSEI  60
VDLAFGALFL ERVPMAEEDN LALSVVCERS PGTAAEAASG RPPKAVSERA RRQTMSRLYA  120
ELGALLPNLP PRASTTRIVE EAIACVGELR AKTAELEAYS AVAAAAGRAA RDGAAEVVAS  180
GKTSCFAVRL RAARARPGSL TRVLEVFQRH GVAVLAATVA RDGEETAVTV TTAAVAPRVL  240
ETIKAEIICA A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042220.0AP004222.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1003B09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878346.12e-84uncharacterized protein LOC112937659
TrEMBLA0A0D9Y9R51e-177A0A0D9Y9R5_9ORYZ; Uncharacterized protein
STRINGOGLUM01G21120.11e-178(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931