 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OGLUM01G13990.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MYB |
| Protein Properties |
Length: 293aa MW: 32456.9 Da PI: 5.7798 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM01G13990.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48 | 2.9e-15 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd l+ +v+ G g+W+ ar g++Rt+k+c++rw++yl
OGLUM01G13990.1 23 RGPWTVEEDAVLAGYVAANGEGRWNELARAAGLRRTGKSCRLRWLNYL 70
89********************************************97 PP
|
| 2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg +T++E++l+++++ ++G++ W++Ia++m+ gRt++++k++w++
OGLUM01G13990.1 76 RGDFTPQEQLLILELHFRWGNR-WSRIAQHMP-GRTDNEIKNYWRT 119
899*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MDAPCGWTTS AAAAVAEEED VRRGPWTVEE DAVLAGYVAA NGEGRWNELA RAAGLRRTGK 60
SCRLRWLNYL RPDVRRGDFT PQEQLLILEL HFRWGNRWSR IAQHMPGRTD NEIKNYWRTR 120
VQKHAKQLGC DVNSRQFKDL MRHLWMPRLV ERIHAAAASS ERAAPPPCAA APASHSGMCH 180
SPDPSTTTSS TAGSSVTHGE QFPSSTNHHL MTMASITTAA ADWSSEQCGS GSATSTSVGI 240
SDDMFEGSWS ELLARAYDDD GADSSLLPDF QMADTGDNCW WSNLEDIWSQ QPY
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK241615 | 0.0 | AK241615.1 Oryza sativa Japonica Group cDNA, clone: J065186D02, full insert sequence. |
| GenBank | AP002883 | 0.0 | AP002883.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0487H02. |
| GenBank | AP003140 | 0.0 | AP003140.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13. |
| GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
