PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G10590.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 311aa    MW: 32906 Da    PI: 8.4577
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G10590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK72.26.7e-234591450
           RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
                     ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ 
  OGLUM01G10590.1 45 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 91
                     6899*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.09728113IPR003035RWP-RK domain
PfamPF020425.1E-214691IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASTAQPQQQ PQQQQEQQPV AAAAAVPTPA PPASEAQPQK PTRVSLSYEE ISKLFSLPIA  60
EAASILGVCT SVLKRICRSH GIVRWPYRKL VSGKSGDDTK NAEREKAKGL LEISKVAKQK  120
ALSASGLSTV SPGAFQGVAK SQQGSSKAGQ VSPPGKQNVL GGSAILSYGT QTKGIPTYMD  180
DFKYGFPSSG LSLQTMKWWG TDSHTETTPA KDDNGEAPES ANEASKGMTD DELDWGADEA  240
EAEADADSAI TTEPSAQLCS LRRKAVDDGR KLLTGKSCGG LELCRLNKRQ KMALAQVFGA  300
SLPEQLRSKL G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0589840.0AK058984.1 Oryza sativa Japonica Group cDNA clone:001-020-E04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625714.10.0uncharacterized protein LOC4326758
TrEMBLA0A0D9Y6080.0A0A0D9Y608_9ORYZ; Uncharacterized protein
STRINGOGLUM01G10590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.13e-10RWP-RK domain-containing protein