PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G07550.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 348aa    MW: 36172.2 Da    PI: 6.4961
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G07550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box186.2e-06444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      C+ +e  e++  C  ++  lC+ C l+ H        H +
  OGLUM01G07550.1  4 LCSACEAAEARVLCCADDAALCARCDLHVHAAnrlagkHHR 44
                     7******99*********************55678888554 PP
2zf-B_box30.38.7e-1060100337
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      +++C+ +++ ++ +fC +++ llC+ C ++ H        H
  OGLUM01G07550.1  60 PPTCDICQDAHAYFFCVEDRALLCRACDVAVHTAnalvsaH 100
                      789***************************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.566147IPR000315B-box-type zinc finger
CDDcd000215.63E-6344No hitNo description
PROSITE profilePS501199.49958105IPR000315B-box-type zinc finger
SMARTSM003367.6E-1658105IPR000315B-box-type zinc finger
PfamPF006433.6E-86092IPR000315B-box-type zinc finger
CDDcd000215.82E-963105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD DAALCARCDL HVHAANRLAG KHHRLPLLSS SSSSSSSPSP  60
PTCDICQDAH AYFFCVEDRA LLCRACDVAV HTANALVSAH RRFLLTGVHV GLDAAADDDD  120
KHPPHPLSSS PPRNTAPPPQ PPPKRSPSPI YSDDDVIDWA TGGHDIGITG NLPDWSLVDE  180
QFNTPALPPV VTKTPPKRAS RGPVTAGTAA AVFGNLAGGS PDWPLNEFFG FAENGTSKAD  240
SGKIGSMDGS PNGGRSSSSS SSSSAAAAAG GGGQDFFGQV PEVHWAVPEL PSPPTASGLH  300
WQRDPRYGGG ATDAGAVFVP DISSPENPFR CFAAAAAGDH TMKRRRRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630321.10.0B-box zinc finger protein 22
TrEMBLA0A0D9Y4X50.0A0A0D9Y4X5_9ORYZ; Uncharacterized protein
STRINGOGLUM01G07550.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-29light-regulated zinc finger protein 1