PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G05200.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 347aa    MW: 36681.7 Da    PI: 9.99
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G05200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.45.6e-12250310262
                      XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L +++++l++e  +l++ 
  OGLUM01G05200.1 250 KEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 310
                      78899***************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-13249313IPR004827Basic-leucine zipper domain
PfamPF001701.5E-10250311IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.185251314IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-16254313No hitNo description
CDDcd147041.24E-22254304No hitNo description
SuperFamilySSF579591.63E-11254311No hitNo description
PROSITE patternPS000360256271IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVPSHATLPA SPPSDGSGVD GPDDGHVALQ NLPPTPPTSP THFPHLSLSS HPATEHTDSF  60
SLSSALSISL SSHPICICFS FPHLCFVFVV VSCFFLLLLL DLILFFFPSL FSAARGEVEC  120
GVVRWLVGEI LIWSSLEMAA QEQEQEKQQA KTSTTSSLPS SSERSSSSAP NNLKEGGGAT  180
RRYGGCRRWA GAAGRRRRGX XXXXAGADER QGNEEGKQQG GGGGGGGAAA GGGQEQAPPA  240
RKRGRSAGDK EQNRLKRLLR NRVSAQQARE RKKAYMTELE AKAKDLELRN AELEQRVSTL  300
QNENNTLRQI LKNTTAHAGK RGGGGGGGGG KGGDGGGGGK KHHFTKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328336GGKGGDGGG
2330339KGGDGGGGGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455099.12e-52transcription factor HY5 isoform X1
TrEMBLA0A0D9Y3Y50.0A0A0D9Y3Y5_9ORYZ; Uncharacterized protein
STRINGOGLUM01G05200.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-30bZIP family protein