PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OGLUM01G04870.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 93aa MW: 10053.2 Da PI: 7.4397

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G04870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.9e-08	27	59	1	33
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgk 33 +g W++eEde+l+ ++ G tW+++a+ gk OGLUM01G04870.1 27 KGLWSPEEDERLYTHITHRGVSTWSSVAQLAGK 59 678**************************9994 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.365	22	55	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.94E-6	25	58	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-10	26	59	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MVRKPTSSRH GEAAGGGGGA AEEKERKGLW SPEEDERLYT HITHRGVSTW SSVAQLAGKN 60 SFCLACNLID FYATNSYTCD LVSRSDKVGI AFA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-76	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645714.1	5e-20	myb-related protein Hv33
TrEMBL	A0A0D9Y3T9	4e-63	A0A0D9Y3T9_9ORYZ; Uncharacterized protein
STRING	OGLUM01G04870.1	6e-64	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP21121	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	2e-09	myb domain protein 61