PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM01G02850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 323aa MW: 35895.1 Da PI: 6.8952 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.1 | 4.4e-13 | 66 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a++ a+++++g OGLUM01G02850.1 66 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRFRG 114 78****9888.8*********......44*************************98 PP | |||||||
2 | B3 | 91.1 | 8.1e-29 | 179 | 272 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk+ ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+++ OGLUM01G02850.1 179 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRS 272 89*****************************999855667999************************************************965 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.70E-13 | 66 | 120 | No hit | No description |
SuperFamily | SSF54171 | 5.75E-16 | 66 | 120 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-8 | 66 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-19 | 67 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-24 | 67 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.074 | 67 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-37 | 175 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-29 | 176 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.48E-28 | 177 | 272 | No hit | No description |
Pfam | PF02362 | 8.0E-26 | 179 | 273 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-20 | 179 | 289 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.394 | 179 | 288 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MEQEAAMVVF SCNSGSGGSS STTDSKQEEE EEEEELAAME EDELIHVVQA AELRLPSSTT 60 ATRPSSRYKG VVPQPNGRWG AQIYERHARV WLGTFPDEEA AARAYDVAAL RFRGRDAVTN 120 RAPAAEGASA GELAFLAAHS KAEVVDMLRK HTYDDELQQG LRRGSRAQPT PRWAREPLFE 180 KAVTPSDVGK LNRLVVPKQQ AERHFPFPLR RHSSDAAGKG VLLNFEDGDG KVWRFRYSYW 240 NSSQSYVLTK GWSRFVREKG LRPGDTVAFS RSAAAWGTEK HLLIDCKKME RNNLATVDAI 300 AVDDDARVVV KLFGVDIAGD KTR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-48 | 176 | 294 | 11 | 122 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC211606 | 0.0 | AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878463.1 | 0.0 | putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
Swissprot | Q9AWS7 | 0.0 | Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A0D9Y317 | 0.0 | A0A0D9Y317_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G02850.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68840.2 | 2e-92 | related to ABI3/VP1 2 |