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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OBART12G19610.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 376aa MW: 41510.2 Da PI: 8.105 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART12G19610.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 148.5 | 3.5e-46 | 37 | 192 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....................kvkaeekew.yfFskrdkkyatgkr 73
pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk +++a eke+ yfF+ r +ky+++ r
OBART12G19610.1 37 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavalqgssssssssslsTAAAAEKECgYFFCLRGRKYRNSIR 129
69***************************.99***************7799*******999999888764444677878*************** PP
NAM 74 knratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
+nr+t sg+Wkatg dk+++s+ g +glkk+Lv+y+g+a kg+ktdW+mhe+rl
OBART12G19610.1 130 PNRVTGSGFWKATGIDKPIYSSslaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 192
*********************8777666655555***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MEEEKRLERI IKEIDSSPIS PGGSGAALLA EDDDLVFPGF RFHPTDQELV GFYLTRKVEK 60
KPFSIDIIKE IDIYKHDPWD LPKVSHGAVA LQGSSSSSSS SSLSTAAAAE KECGYFFCLR 120
GRKYRNSIRP NRVTGSGFWK ATGIDKPIYS SSLAAAAAGA GDCIGLKKSL VYYRGSAGKG 180
TKTDWMMHEF RLPSSISDSD HLQDASETWT ICRIFKRSMT YTKGRAAAAA SMNKRISHQL 240
QHIHHHQQQF YYHEVVHDHG HHHRRHLQQY AGRASMAAAA ANIVDVIDHS SDAETTTRSH 300
SHSQSHLVAD IRHRQSPFML DFHAGTAVSS SSTAAAGWSE VMSFSRDGGS SSGSSWDELG 360
RIMDISTNSA NNNYYL
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-43 | 38 | 217 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-43 | 38 | 217 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-43 | 38 | 217 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-43 | 38 | 217 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 3e-43 | 38 | 217 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 3e-43 | 38 | 217 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
| Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
Plant Signal Behav, 2016. 11(6): p. e1181245
[PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
Nat Plants, 2016. 2: p. 16013
[PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
Front Plant Sci, 2017. 8: p. 214
[PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
Plant J., 2017. 92(6): p. 1106-1120
[PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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