PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G18120.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 297aa    MW: 32000.4 Da    PI: 6.5318
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G18120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.41.2e-16111166459
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                       kr+rr+ +NRe+ArrsR+RK+a +  Le  v +L +eN +L+k+l+ +++++++ 
  OBART12G18120.1 111 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 166
                      69*****************************************7777777776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-18104172IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.047110173IPR004827Basic-leucine zipper domain
PfamPF001707.1E-14111165IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.57E-12112164No hitNo description
Gene3DG3DSA:1.20.5.1708.3E-14112165No hitNo description
CDDcd147029.29E-19113163No hitNo description
PROSITE patternPS000360115130IPR004827Basic-leucine zipper domain
PfamPF124982.7E-17179275IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKRRGGGGGG SDPGAYAAVL KTKLDLYCAA VAKSMEAKPQ ESSLGYLNLQ ASDTSQLASQ  60
ASFNGYGSTR VTNSNAIHED YDQGKPANSG TSKEQSDDDG DLEEDTDPVN AKRTRRMLSN  120
RESARRSRKR KQAHLNDLES QVSQLRSENA SLQKRLSDMT QKYKQSTTEY GNLQDDMNAM  180
RRKVNIAEEA VRRVTGIGLQ LFTTSEMPAS SMPFSSGVSD AASAAAAAAL VEDDWTNCSL  240
PDEAIPVPSA AMALRSPSMR RVASLENLQK RIHAGDVTHF EAASALSLPE ATACDNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RRSRKRK
2124131RRSRKRKQ
3126131SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376610.0CT837661.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620821.10.0light-inducible protein CPRF2 isoform X2
TrEMBLA0A0D3HWI00.0A0A0D3HWI0_9ORYZ; Uncharacterized protein
STRINGOBART12G18120.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-27bZIP family protein