PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G17910.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 337aa    MW: 36403.5 Da    PI: 9.576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G17910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH215.9e-07135162330
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                      +    r +rRR+riN++f  L++l+P +
  OBART12G17910.1 135 TEERRRVKRRRSRINEKFKMLQRLVPGC 162
                      5566788*******************96 PP
2HLH25.22.9e-08202228430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                      +h   E+rRR+riN++f  L++l+P +
  OBART12G17910.1 202 THGLTEKRRRSRINEKFKMLQRLVPGC 228
                      78899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.064132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4134164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-6139167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-6141167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-7184232No hitNo description
SuperFamilySSF474593.79E-8196230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.194198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-9201231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6202228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMSFPYSSGD LGEATAAAAV DMITLDQMFR DYDASTGDDL FELVWESCGG GEIDSGSGEV  60
QPAGVPCCRR LLPGSSPEPT SEDEMAAWLS TIVTGSGGGG GDDVAAGGDH QDPAVKKPDG  120
EPLTEKMDKK LPTRTEERRR VKRRRSRINE KFKMLQRLVP GCDKKPDGEP LTEKMDKKLP  180
TRTEERRRVK HKARRNPGYA ETHGLTEKRR RSRINEKFKM LQRLVPGCDK AMYPTMVRPA  240
AVYPVVQPPP AFAAGGVARR PPPPSPADGG GLRPPPVPVF PFGAPVIPLV TMMMPAAAAA  300
AAPPWIYPSS STGDHHLLQG SSSNGSIATI ASSRHRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080420.0AK108042.1 Oryza sativa Japonica Group cDNA clone:002-137-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619633.11e-109transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLA0A0D3HWF00.0A0A0D3HWF0_9ORYZ; Uncharacterized protein
STRINGOBART12G17910.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165781111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-08BIG PETAL P