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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART12G09870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 434aa MW: 46893.2 Da PI: 6.2491 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.3 | 1.7e-20 | 9 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 GfrF+P++ee++++yL + ++g++ + +e i+++d+y + eP+dL k +++ + + +fF+ ++ + + +r++ g+W ++ + OBART12G09870.1 9 KLGFRFNPSQEEVITYYLPRLIAGHPPKDTEGyIHRADVYGAdEPRDLAgKyapVARSPNGDRFFFTGCKRVKG---KFSRSAGGGTWVSQSS- 98 67************************6655555*******9869****843443333334478***99998764...7999999*****8866. PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++++g ++g k + f + g++tdW+m+ey+l OBART12G09870.1 99 KDLKNREGIKIGEVKNFRFK----KGGNNTDWLMEEYHL 133 888888*************8....567789*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-23 | 8 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.62 | 8 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-14 | 11 | 133 | IPR003441 | NAC domain |
PRINTS | PR01217 | 1.5E-10 | 169 | 185 | No hit | No description |
PRINTS | PR01217 | 1.5E-10 | 212 | 233 | No hit | No description |
PRINTS | PR01217 | 1.5E-10 | 268 | 285 | No hit | No description |
PRINTS | PR01217 | 1.5E-10 | 356 | 381 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MASLDLLLKL GFRFNPSQEE VITYYLPRLI AGHPPKDTEG YIHRADVYGA DEPRDLAGKY 60 APVARSPNGD RFFFTGCKRV KGKFSRSAGG GTWVSQSSKD LKNREGIKIG EVKNFRFKKG 120 GNNTDWLMEE YHLCGKEAGG VVEPVVCRIY VSPRAAPDSV AHQESAALPP PQELVPPPQE 180 LAPPPYPAAQ AAPQAPAPPR QVPVITQQQA PPQKRPAAPV AEPPCATKKM KGAVSAKPMA 240 PQSSVTASAA PPRCAVAPSQ HHPPFQTYPT DPFEPPAPAA SVTQPSVPAT PEQGPAYVPD 300 PADIGMEMDE LMSFLDSTPV DGILPSQLFE YDELAKELED ALQGGGEEDG NDNPPRCATP 360 PTPPPPRPAS WPAMAPPPPH PPILTFPKDP GGCDKQSQGG YRVLLKDMGD DQIDQQWLKV 420 YLKDYHHLMK SCKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619212.1 | 0.0 | vegetative cell wall protein gp1 | ||||
TrEMBL | A0A0D3HTS5 | 0.0 | A0A0D3HTS5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART12G09870.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04400.1 | 1e-13 | NAC domain containing protein 77 |