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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART12G09450.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
M-type_MADS |
Protein Properties |
Length: 213aa MW: 23570.1 Da PI: 11.07 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART12G09450.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 69.3 | 3.5e-22 | 22 | 69 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
ri+nk +rqvtf+kRr g++KKA+EL L++a vav++fs+ ++y +
OBART12G09450.1 22 RIDNKERRQVTFTKRRGGLFKKASELALLTGASVAVVVFSPAKHVYAF 69
8*********************************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MTVMVHPLGR TSMGRQRIEI RRIDNKERRQ VTFTKRRGGL FKKASELALL TGASVAVVVF 60 SPAKHVYAFG HPSVDAVLRS YASVPGEAAA VAPVPVHGGS GGEDVDLLGL RLAADDTGAQ 120 VAAEHARMRD VAARIVQAKA GRRFWWEADV DALGEAELLE FVTALKKLRD NVGRHANTLL 180 APQPPPLPLQ QKQRRRRHFD LPKFQLWYTH NSF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL713942 | 0.0 | AL713942.4 Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |