PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OBART12G05400.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 372aa MW: 40867.3 Da PI: 9.8224

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART12G05400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23	1.7e-07	240	273	17	50
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 A+rsR RK+++i+eLe++v++L++e + e++ OBART12G05400.1 240 AQRSRVRKLQYIAELERRVQALQTEGVEVSAEMD 273 89*********************99776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-6	229	288	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.24E-15	230	280	No hit	No description
SuperFamily	SSF57959	5.4E-6	239	282	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-6	240	294	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MMANARFQKQ ALLPPRSPFP AAVGAAPSPS PHAELGPIAR PRDAPHRHGH QRTSSESVLI 60 DEQPSWLEDL LDEPEAAARP HGRPGHRRSS SDSFTLFDGG ASAAAAGMYD NVFDGMRGRG 120 GGGQQVGSWG GVPEFFPEQS SFGRPQGQGG RPWDSRLMLR QGGGGGGGMP VPMREMNGGH 180 HGPPNAFGDH GHGSLPNGVD RKGPGDSAHD QRMGAERKEG AHLRHSQSEA DTKRAKQQYA 240 QRSRVRKLQY IAELERRVQA LQTEGVEVSA EMDFLGQQNI MLDLENKALK QRLESLSQEH 300 LIKRFQQEMF EREIGRLRSL FQQQQQQQHI PQQQGPTHSR SNSRDLDSQF ANMSLKHGDP 360 NSGRDAVPGL RI

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MMANARFQKQ ALLPPRSPFP AAVGAAPSPS PHAELGPIAR PRDAPHRHGH QRTSSESVLI  60
DEQPSWLEDL LDEPEAAARP HGRPGHRRSS SDSFTLFDGG ASAAAAGMYD NVFDGMRGRG  120
GGGQQVGSWG GVPEFFPEQS SFGRPQGQGG RPWDSRLMLR QGGGGGGGMP VPMREMNGGH  180
HGPPNAFGDH GHGSLPNGVD RKGPGDSAHD QRMGAERKEG AHLRHSQSEA DTKRAKQQYA  240
QRSRVRKLQY IAELERRVQA LQTEGVEVSA EMDFLGQQNI MLDLENKALK QRLESLSQEH  300
LIKRFQQEMF EREIGRLRSL FQQQQQQQHI PQQQGPTHSR SNSRDLDSQF ANMSLKHGDP  360
NSGRDAVPGL RI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287555	0.0	AK287555.1 Oryza sativa Japonica Group cDNA, clone: J065019F14, full insert sequence.
GenBank	AK287716	0.0	AK287716.1 Oryza sativa Japonica Group cDNA, clone: J065134G21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618309.1	0.0	uncharacterized protein At4g06598
Refseq	XP_025877630.1	0.0	uncharacterized protein At4g06598
TrEMBL	A0A0D3HS99	0.0	A0A0D3HS99_9ORYZ; Uncharacterized protein
TrEMBL	I1R4S7	0.0	I1R4S7_ORYGL; Uncharacterized protein
STRING	ORGLA12G0053300.1	0.0	(Oryza glaberrima)
STRING	OBART12G05400.2	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3310	36	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-60	bZIP family protein