PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART12G03770.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 562aa MW: 61549.7 Da PI: 4.4239

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART12G03770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	170.5	1.3e-52	175	559	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 +lLl+ A av++gd+ a+a+++rl +l a +g+ p+ la yf+++L+ r+++ +a p+s+ ++ + a+++++e++ OBART12G03770.1 175 DLLLAGAMAVDAGDAVHASAIMSRLDDLlADIAGRrsceatsPVDHLAYYFARGLKLRISG------AATPASSPPPPAANWSSPAYRMLQELT 262 689999*****************998766666456666679**************......3344444444445667789**** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa....sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 P++kf+h+taNqaIlea+e + vH++Df++++G+QW +L+ La R+++pp + +T v + + ++ ++ L++fAe+l++pf++ OBART12G03770.1 263 PFVKFAHFTANQAILEATEDDLDVHVVDFNVGEGVQWSSLMSDLAaagrHRSSKPPLFHLTDVIT-SGAGTPRTADARRWLSEFAESLHLPFRY 355 ****************************************9664447799***9999.4458999999999*********** PP GRAS 179 nvlvakrledl..eleeLrvkp....gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh.nse..........sFl 254 + l++++ +d +eL++ ++ + ++ +++l+s + +L ++ l+Pk+v+++e e+++ +++ +F OBART12G03770.1 356 TSLHVHDGDDDdeLHHELAMICngssSPPVILTCDD--TTTTT-NTPLRSrLKLLLLGTITILQPKLVILIEDELSRiSKNppspslaappPFP 446 777555542222334332234323334444443..33332.3344441467889**************999554489******* PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348 e f++a+ +++a+++s+++ l + ++e ++++ + +g+e vv + ++ + r +l+ +++e G+++ ++s + ++q k+l ++ g OBART12G03770.1 447 EFFSDAVAHFTAVMESTASCLVSYDDE-AWLSLRRVGEE---VVGPRVEDAVGRYGSLAGGAQMME--GLRAREVSGFSVAQGKMLAGLFG-GG 533 *************8776554433.33332223433...344555555556666677778876..*******************.67 PP GRAS 349 yrve.eesgslvlgWkdrpLvsvSaW 373 + v +e+g l l+Wk+rpL+svS W OBART12G03770.1 534 FGVVhQEKGRLALCWKSRPLISVSLW 559 876638899999************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.875	147	540	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-50	175	559	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
METMSYPCSL LIPFSTQFEE ISSSSLLLWS PQAEENPHEN ANMYEFDADH SHDQIHQDHQ 60 FLDMMVIQES ANEFDGNHSH DQIHQDHEFL ETMVIQESAN EFDGDHSHDQ IHQDHEFLEM 120 MAIQESANDV LQLQDDFSVP NADPLAASFE FDERLAVAGH ENGNVVAAQE ESAGDLLLAG 180 AMAVDAGDAV HASAIMSRLD DLLADIAGRR SCEATSPVDH LAYYFARGLK LRISGAATPA 240 SSPPPPAANW SSPAYRMLQE LTPFVKFAHF TANQAILEAT EDDLDVHVVD FNVGEGVQWS 300 SLMSDLAAAG RHRSSKPPLF HLTDVITSGA GTPRTADARR WLSEFAESLH LPFRYTSLHV 360 HDGDDDDELH HELAMICNGS SSPPVILTCD DTTTTTNTPL RSRLKLLLLG TITILQPKLV 420 ILIEDELSRI SKNPPSPSLA APPPFPEFFS DAVAHFTAVM ESTASCLVSY DDEAWLSLRR 480 VGEEVVGPRV EDAVGRYGSL AGGAQMMEGL RAREVSGFSV AQGKMLAGLF GGGFGVVHQE 540 KGRLALCWKS RPLISVSLWC PK

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

METMSYPCSL LIPFSTQFEE ISSSSLLLWS PQAEENPHEN ANMYEFDADH SHDQIHQDHQ  60
FLDMMVIQES ANEFDGNHSH DQIHQDHEFL ETMVIQESAN EFDGDHSHDQ IHQDHEFLEM  120
MAIQESANDV LQLQDDFSVP NADPLAASFE FDERLAVAGH ENGNVVAAQE ESAGDLLLAG  180
AMAVDAGDAV HASAIMSRLD DLLADIAGRR SCEATSPVDH LAYYFARGLK LRISGAATPA  240
SSPPPPAANW SSPAYRMLQE LTPFVKFAHF TANQAILEAT EDDLDVHVVD FNVGEGVQWS  300
SLMSDLAAAG RHRSSKPPLF HLTDVITSGA GTPRTADARR WLSEFAESLH LPFRYTSLHV  360
HDGDDDDELH HELAMICNGS SSPPVILTCD DTTTTTNTPL RSRLKLLLLG TITILQPKLV  420
ILIEDELSRI SKNPPSPSLA APPPFPEFFS DAVAHFTAVM ESTASCLVSY DDEAWLSLRR  480
VGEEVVGPRV EDAVGRYGSL AGGAQMMEGL RAREVSGFSV AQGKMLAGLF GGGFGVVHQE  540
KGRLALCWKS RPLISVSLWC PK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-21	200	562	39	381	Protein SCARECROW
5b3h_A	1e-21	200	562	38	380	Protein SCARECROW
5b3h_D	1e-21	200	562	38	380	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809511.1	1e-140	nodulation-signaling pathway 2 protein-like isoform X2
TrEMBL	A0A0D3HRQ8	0.0	A0A0D3HRQ8_9ORYZ; Uncharacterized protein
STRING	OBART12G03770.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17114	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	4e-17	GRAS family protein