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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART12G03440.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 233aa MW: 24511.3 Da PI: 6.1127 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART12G03440.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 131.4 | 6.7e-41 | 19 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+pGfrF Pt+eel+ +yL+++++g++ ++++vi+ vd+y ++P++L + ++++++++w+fF++r++++ +g r+ r+t sgyWkatg+
OBART12G03440.1 19 TPGFRFYPTEEELIGFYLRHRLAGTRaDDVARVIPVVDVYGYHPSQLAAmagvATAGDREQWFFFCPRAERELHGGRPARTTPSGYWKATGSPS 112
69**********************995666778**************8445544444666********************************** PP
NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
v+s+ ++++g+k+t+vfy+grap+g+kt+W m+ey++
OBART12G03440.1 113 FVFSSssaaATRVIGVKRTMVFYQGRAPSGTKTRWKMNEYKA 154
***9866666667***************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MVMSGGGGGA RIVSDPAATP GFRFYPTEEE LIGFYLRHRL AGTRADDVAR VIPVVDVYGY 60
HPSQLAAMAG VATAGDREQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSFVFSSSSA 120
AATRVIGVKR TMVFYQGRAP SGTKTRWKMN EYKAVAAAAA DDDHNAAGVA VQLPPMAPPP 180
SSSASGGSSE DAAIDWSSLI TAATDSATAA VDFSFNDDID FSPAAVGPWA PQL
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swm_B | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swm_C | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swm_D | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swp_A | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swp_B | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swp_C | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swp_D | 3e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 4dul_A | 3e-28 | 20 | 155 | 19 | 143 | NAC domain-containing protein 19 |
| 4dul_B | 3e-28 | 20 | 155 | 19 | 143 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL928758 | 0.0 | AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AL954632 | 0.0 | AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
| GenBank | KP033190 | 0.0 | KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds. |
