PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G03220.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 489aa    MW: 52904.2 Da    PI: 7.3453
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G03220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.9e-11185211733
                      HHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   7 errkqkNReAArrsRqRKkaeieeLee 33 
                       rr+++NReAAr+sR+RKka+i++Le 
  OBART12G03220.1 185 MRRLAQNREAARKSRLRKKAYIQQLES 211
                      69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-7177225No hitNo description
SMARTSM003381.8E-5178254IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.128181225IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-6183219No hitNo description
PfamPF001701.4E-7184212IPR004827Basic-leucine zipper domain
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF141443.5E-30263337IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGEARRGQNP HHVLGYGFHG TTLPNSMASA NLFEQGGGGG GGAAYFGELE EALVHQVATL  60
RRRAQQTATT TTSHHGHTTP FSTAAAAATA TATARPPATL DIFPSWPMRR SSLPTPKDGC  120
SNVTADTTDS ESSSKNNGDQ GAAAADMASQ FDQIPQQQQK QHKKMAASST HSDHRMTKTL  180
DPKIMRRLAQ NREAARKSRL RKKAYIQQLE SSKLRLAQME QDLERARSQG LLLGGSPGGN  240
TSAGAAMFDA EYGRWLEDGG RRMAELHGGL HAHLPDGDLR AIVDDALAHY DELFRLRAAA  300
AKADVFHLIT GTWATPAERC FLWMGGFRPS DLLKTVAPQL DPLTEQQVVG ICSLQQSSQQ  360
AEEALSQGLE QLHQSLAETV ANGGSVVDEA SLGSFMGYMA LAVGKLSNLE SFVIQADNLR  420
QQTLHQMHRI LTIRQAARCF LAIGEYHNRL RALSSLWASR PREILVADEG NCGELSIAAQ  480
PSESQFSAF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016200.0AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBankFJ7509290.0FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619722.10.0transcription factor TGAL11
SwissprotQ2QXL00.0TGL11_ORYSJ; Transcription factor TGAL11
TrEMBLA0A0D3HRJ40.0A0A0D3HRJ4_9ORYZ; Uncharacterized protein
STRINGOBART12G03220.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44443670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-128bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]