PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G02250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 916aa    MW: 101379 Da    PI: 6.9713
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G02250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2361.7e-72204122346
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      v lL ecA +v++g++e+a+   ++++ l   ++ p+q l + ++  La+rl++s ++l  al  ps+    + s+  aa++ f+++ P+l  +
  OBART12G02250.1  20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQHLSKIIVDSLAHRLLSSIQGLPGALiDPSDYF--EKSTLWAARHNFFKLNPYLSTG 110
                      6789**********************9876.5667*******************9999998874444443..57788889999*********** PP

             GRAS  95 hltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      ++t N aI+ea+e e    + vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l e+++ L+k Ae+l+v+f+f   v
  OBART12G02250.1 111 FVTINWAIMEAMEDEkvelQVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLAEMQSLLSKKAESLEVSFRFIS-V 199
                      ***************9998999*****8653389***************************....9**************************.7 PP

             GRAS 183 akrledleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklv 231
                        rle+l++++Lr       g a+a++++lq+hrll                                           s  +++   ++L+++
  OBART12G02250.1 200 IGRLETLDFSNLRSTFqikfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAI 293
                      99**********54444555*******************************************************98666777778899***** PP

             GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                      + l+P+++v++eq+adhn+  F +rf e l+yy+alfd+++a ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+
  OBART12G02250.1 294 RALKPNIMVIMEQDADHNTLLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEES 387
                      ****************************************77654444456******************************************* PP

             GRAS 323 GFkpvplsekaakqaklllrkvk.s 346
                      GF++v+ls +a  ++ l +r  +  
  OBART12G02250.1 388 GFHNVQLSFSAIREVGLSVRGNSrA 412
                      ***********99999888877744 PP

2GRAS304.72.2e-934789052374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s    +          ++ P+    
  OBART12G02250.1 478 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSA---DA---------HLVPCRAPP 559
                      679*******************************9********************9999999998887762...22.........234444444 PP

             GRAS  95 hlt.aNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      h+  a     +a+ege+ vH +Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn+ v+ +
  OBART12G02250.1 560 HVRrAPVPEARAMEGERFVHLVDFSgpVANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEAK 648
                      443133334689************87799*****************************....9**************************.7999 PP

             GRAS 186 ledleleeL....rvkpgEalaVnlvlqlhrll............................................................. 214
                      l+++++++L     v++gEalaV++vlqlhrll                                                             
  OBART12G02250.1 649 LDEMDFDALrhdlGVRSGEALAVSVVLQLHRLLavddgrrhaaagcltpvqiiarssprsfgellerelntrlqlspdasvvsslsphspaaat 742
                      **999998843335667****************************************************************************9 PP

             GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                       +++++++ +  ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegaer+e
  OBART12G02250.1 743 aAHPMTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAERTE 835
                      8666666667999*********************************************999.68889*************************** PP

             GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                      rhe++++W +r+e+aG+++v ls++ a++a+ ll+ +++ g y+v ++   + ++++W++rpL++v+aWr
  OBART12G02250.1 836 RHERARQWAARMEAAGMESVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 905
                      **************************************8888****884345678**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.941419IPR005202Transcription factor GRAS
PfamPF035145.8E-7020412IPR005202Transcription factor GRAS
PROSITE profilePS5098542.556451882IPR005202Transcription factor GRAS
PfamPF035147.8E-91478905IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQHLSK  60
IIVDSLAHRL LSSIQGLPGA LIDPSDYFEK STLWAARHNF FKLNPYLSTG FVTINWAIME  120
AMEDEKVELQ VVHIVDLSCS AAHPWQWLKL LDDFHGRPGG APELYLTVLH DDNDFLAEMQ  180
SLLSKKAESL EVSFRFISVI GRLETLDFSN LRSTFQIKFG VAVAISCALQ MHRLLLVDDN  240
LSSTSIAQLQ KMANFTQPKQ MASSVCSPAS TLNYLQTPSP RTPKLLARLL SAIRALKPNI  300
MVIMEQDADH NTLLFRDRFN EVLNYYAALF DCFHAVAAAN PGRTDERLRV ERMILREEIK  360
NILVCEGVHR HERHERLDQW AMHMEESGFH NVQLSFSAIR EVGLSVRGNS RAADYIQISH  420
SGCSVQHMSG SSRGMFQDDM LSSATSSPAS SVYSPSPSPS NGSWVQELSH DQQSVRLIGL  480
LYQCAAEVSA GSFDRANLCL EHITQLASLD APHALQRLAA VFADALARKL LNLIPGLSRA  540
LLSSANSADA HLVPCRAPPH VRRAPVPEAR AMEGERFVHL VDFSGPVANP VQWIALFHAF  600
RGRREGPPHL RITAVHDSKE FLANMAAVLS KEAEAFDIAF QFNAVEAKLD EMDFDALRHD  660
LGVRSGEALA VSVVLQLHRL LAVDDGRRHA AAGCLTPVQI IARSSPRSFG ELLERELNTR  720
LQLSPDASVV SSLSPHSPAA ATAAHPMTST PKLGSFLSAV RSLSPKIMVM TEQEANHNGG  780
AFQERFDEAL NYYASLFDCL QRSAAAAAER ARVERVLLGE EIRGVVACEG AERTERHERA  840
RQWAARMEAA GMESVGLSYS GAMEARKLLQ SCGWAGPYEV RHDAGGHGFF FCWHKRPLYA  900
VTAWRPAASR RGHTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-17757905226375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619625.10.0scarecrow-like protein 3
TrEMBLA0A0D3HR760.0A0A0D3HR76_9ORYZ; Uncharacterized protein
STRINGOBART12G02250.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-84scarecrow-like 3