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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART12G02250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 916aa MW: 101379 Da PI: 6.9713 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 236 | 1.7e-72 | 20 | 412 | 2 | 346 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 v lL ecA +v++g++e+a+ ++++ l ++ p+q l + ++ La+rl++s ++l al ps+ + s+ aa++ f+++ P+l + OBART12G02250.1 20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQHLSKIIVDSLAHRLLSSIQGLPGALiDPSDYF--EKSTLWAARHNFFKLNPYLSTG 110 6789**********************9876.5667*******************9999998874444443..57788889999*********** PP GRAS 95 hltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 ++t N aI+ea+e e + vHi+D++ s ++ QW+ Ll+ + Rp+g+p+l +T++++ +++ l e+++ L+k Ae+l+v+f+f v OBART12G02250.1 111 FVTINWAIMEAMEDEkvelQVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLAEMQSLLSKKAESLEVSFRFIS-V 199 ***************9998999*****8653389***************************....9**************************.7 PP GRAS 183 akrledleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklv 231 rle+l++++Lr g a+a++++lq+hrll s +++ ++L+++ OBART12G02250.1 200 IGRLETLDFSNLRSTFqikfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAI 293 99**********54444555*******************************************************98666777778899***** PP GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + l+P+++v++eq+adhn+ F +rf e l+yy+alfd+++a ++++ +er vEr++l++ei+n++ ceg +r erhe+l +W + +ee+ OBART12G02250.1 294 RALKPNIMVIMEQDADHNTLLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEES 387 ****************************************77654444456******************************************* PP GRAS 323 GFkpvplsekaakqaklllrkvk.s 346 GF++v+ls +a ++ l +r + OBART12G02250.1 388 GFHNVQLSFSAIREVGLSVRGNSrA 412 ***********99999888877744 PP | |||||||
2 | GRAS | 304.7 | 2.2e-93 | 478 | 905 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 + lL++cA vs+g++ +a+ +L+++ +las d+ ++qRlaa+f+ ALa++l++ ++l++al +s++s + ++ P+ OBART12G02250.1 478 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSA---DA---------HLVPCRAPP 559 679*******************************9********************9999999998887762...22.........234444444 PP GRAS 95 hlt.aNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 h+ a +a+ege+ vH +Df+ + +++QW+aL++a+ R+egpp+lRiT+v++ ske l +++ L+k Ae++++ f+fn+ v+ + OBART12G02250.1 560 HVRrAPVPEARAMEGERFVHLVDFSgpVANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEAK 648 443133334689************87799*****************************....9**************************.7999 PP GRAS 186 ledleleeL....rvkpgEalaVnlvlqlhrll............................................................. 214 l+++++++L v++gEalaV++vlqlhrll OBART12G02250.1 649 LDEMDFDALrhdlGVRSGEALAVSVVLQLHRLLavddgrrhaaagcltpvqiiarssprsfgellerelntrlqlspdasvvsslsphspaaat 742 **999998843335667****************************************************************************9 PP GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307 +++++++ + ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegaer+e OBART12G02250.1 743 aAHPMTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAERTE 835 8666666667999*********************************************999.68889*************************** PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374 rhe++++W +r+e+aG+++v ls++ a++a+ ll+ +++ g y+v ++ + ++++W++rpL++v+aWr OBART12G02250.1 836 RHERARQWAARMEAAGMESVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 905 **************************************8888****884345678**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.94 | 1 | 419 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-70 | 20 | 412 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 42.556 | 451 | 882 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.8E-91 | 478 | 905 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 916 aa Download sequence Send to blast |
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQHLSK 60 IIVDSLAHRL LSSIQGLPGA LIDPSDYFEK STLWAARHNF FKLNPYLSTG FVTINWAIME 120 AMEDEKVELQ VVHIVDLSCS AAHPWQWLKL LDDFHGRPGG APELYLTVLH DDNDFLAEMQ 180 SLLSKKAESL EVSFRFISVI GRLETLDFSN LRSTFQIKFG VAVAISCALQ MHRLLLVDDN 240 LSSTSIAQLQ KMANFTQPKQ MASSVCSPAS TLNYLQTPSP RTPKLLARLL SAIRALKPNI 300 MVIMEQDADH NTLLFRDRFN EVLNYYAALF DCFHAVAAAN PGRTDERLRV ERMILREEIK 360 NILVCEGVHR HERHERLDQW AMHMEESGFH NVQLSFSAIR EVGLSVRGNS RAADYIQISH 420 SGCSVQHMSG SSRGMFQDDM LSSATSSPAS SVYSPSPSPS NGSWVQELSH DQQSVRLIGL 480 LYQCAAEVSA GSFDRANLCL EHITQLASLD APHALQRLAA VFADALARKL LNLIPGLSRA 540 LLSSANSADA HLVPCRAPPH VRRAPVPEAR AMEGERFVHL VDFSGPVANP VQWIALFHAF 600 RGRREGPPHL RITAVHDSKE FLANMAAVLS KEAEAFDIAF QFNAVEAKLD EMDFDALRHD 660 LGVRSGEALA VSVVLQLHRL LAVDDGRRHA AAGCLTPVQI IARSSPRSFG ELLERELNTR 720 LQLSPDASVV SSLSPHSPAA ATAAHPMTST PKLGSFLSAV RSLSPKIMVM TEQEANHNGG 780 AFQERFDEAL NYYASLFDCL QRSAAAAAER ARVERVLLGE EIRGVVACEG AERTERHERA 840 RQWAARMEAA GMESVGLSYS GAMEARKLLQ SCGWAGPYEV RHDAGGHGFF FCWHKRPLYA 900 VTAWRPAASR RGHTRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-17 | 757 | 905 | 226 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ377947 | 0.0 | FQ377947.1 Oryza glaberrima chromosome 12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619625.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0D3HR76 | 0.0 | A0A0D3HR76_9ORYZ; Uncharacterized protein | ||||
STRING | OBART12G02250.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 2e-84 | scarecrow-like 3 |