PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G02110.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 783aa    MW: 86004.7 Da    PI: 5.303
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G02110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.6e-10634679550
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      k+ r+   NReA r++Rq+Kka +++Lee+vk L   N++L k+l+
  OBART12G02110.1 634 KKSRKPLGNREAVRKYRQKKKAHTAHLEEEVKRLRVINQQLVKRLQ 679
                      8999999***********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF549286.69E-36108273IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010217.472111187IPR000504RNA recognition motif domain
SMARTSM003607.7E-23112183IPR000504RNA recognition motif domain
CDDcd005908.44E-21113183No hitNo description
PfamPF000764.0E-17113181IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3306.7E-38114268IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010211.691189270IPR000504RNA recognition motif domain
SMARTSM003606.1E-12190266IPR000504RNA recognition motif domain
PfamPF000761.4E-10191255IPR000504RNA recognition motif domain
CDDcd005901.05E-11191257No hitNo description
Gene3DG3DSA:3.30.70.3301.3E-22269360IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.22E-21276362IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010215.528282359IPR000504RNA recognition motif domain
SMARTSM003605.4E-18283355IPR000504RNA recognition motif domain
PfamPF000766.0E-16284352IPR000504RNA recognition motif domain
Gene3DG3DSA:1.20.5.1701.2E-12629698No hitNo description
SMARTSM003386.6E-9630697IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.795632679IPR004827Basic-leucine zipper domain
PfamPF077165.7E-11633686IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.39E-7634679No hitNo description
CDDcd146865.12E-11635688No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MPRRTDNAAS ANSVEPEKSE ECLEFDDDDE EEVEEEEIEY EEIEEEIEEE EVEEDEDVVE  60
EVEEVDEEED EEEEEESDET EGVSKTKGVH QKDVTEKGKH AELLALPPHG SEVYVGGISS  120
DVSSEDLKRL CEPVGEVVEV RMMRGKDDSR GYAFVNFRTK GLALKAVKEL NNAKLKGKRI  180
RVSSSQAKNK LFIGNVPHSW TDDDFRKVVE EVGPGVLKAD LMKVSSANRN RGYGFVEYYN  240
HACAEYARQE MSSPTFKLDS NAPTVSWADP KNNDSASTSQ VKSVYVKNLP KNVTQAQLKR  300
LFEHHGEIEK VVLPPSRGGH DNRYGFVHFK DRSMAMRALQ NTERYELDGQ VLDCSLAKPP  360
AADKKDDRVP LPSSNGAPLL PSYPPLGYGI MSVPGAYGAA PASTAQPMLY APRAPPGAAM  420
VPMMLPDGRL VYVVQQPGGQ LPLASPPPQQ AGHRSGSGGR HGGSGGRYGG GGGSSGSSRP  480
EECVSETRLY MRILPVSQSA ESDGALYRQF TPVSHMDYEI SGPESEVDSE VWLGWVAQRR  540
RRRAKAPYSG RRRVHEASDA GDDTAIPRSW QQVKEIPTSL DDFLPSIRTT CTHTHTCNPP  600
GPSATEHTHT CYHTHTRVFS SDDDSCGGDK AKPKKSRKPL GNREAVRKYR QKKKAHTAHL  660
EEEVKRLRVI NQQLVKRLQG QAALEVEVVR LRSLLVDVRS RINGALGSCP IQAQCGVDNV  720
LGCDGMAQCF AGKPELGVRQ SCAPSTVNCH ISSDSGQNLV VPHALSPSDV IGSFMVSSTS  780
KDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6r5k_D4e-149144922479Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_F4e-149144922479Polyadenylate-binding protein, cytoplasmic and nuclear
6r5k_H4e-149144922479Polyadenylate-binding protein, cytoplasmic and nuclear
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464472GGRYGGGGG
2538552RRRRRAKAPYSGRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA on GAGA-like motif and 5'-(C/G)ACGTG(G/T)C(A/G)-3' consensus motif in the promoters of target genes (PubMed:27495811). Component of ribonucleosomes, which are complexes of at least 20 other different heterogenious nuclear ribonucleoproteins (hnRNP). hnRNP play an important role in processing of precursor mRNA in the nucleus (By similarity). Required during flower development and for cell fate determination (PubMed:21304947). Acts both as an antagonist and as a promoter of polycomb LHP1 gene regulation activity, depending of target genes, to regulate the transcription of stress-responsive and flowering genes (PubMed:21304947, PubMed:27495811). May regulate histone H3 trimethylation on lysine 27 (H3K27me3) (PubMed:21304947). Recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and acetylated at 'Lys-9' (H3K9ac), leading to epigenetic activation. When in complex with LHP1, recognizes and binds histone H3 tails methylated at 'Lys-4' (H3K4me) and 'Lys-27' (H3K27me), mostly corresponding to stress-responsive genes (PubMed:27495811). May function as a suppressor of cell-autonomous immune responses involving glucosinolates, salicylic acid (SA) and jasmonic acid (JA) pathways toward pathogenic bacteria and fungi (PubMed:24914891). {ECO:0000250|UniProtKB:O60506, ECO:0000269|PubMed:21304947, ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slighty induced upon pathogen infection (e.g. P.syringae) (PubMed:24914891). Rapidly recruited to chromatin upon methyl jasmonate treatment (MeJA) to mediate transcriptional gene activation (PubMed:27495811). {ECO:0000269|PubMed:24914891, ECO:0000269|PubMed:27495811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687000.0AK068700.1 Oryza sativa Japonica Group cDNA clone:J013160I09, full insert sequence.
GenBankAK0694930.0AK069493.1 Oryza sativa Japonica Group cDNA clone:J023024M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619732.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_015619733.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_015619734.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
RefseqXP_025877774.10.0heterogeneous nuclear ribonucleoprotein Q isoform X2
SwissprotQ9ASP61e-125HNRPQ_ARATH; Heterogeneous nuclear ribonucleoprotein Q
TrEMBLA0A0D3HR600.0A0A0D3HR60_9ORYZ; Uncharacterized protein
STRINGOBART12G02110.30.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.18e-19bZIP family protein
Publications ? help Back to Top
  1. Peal L,Jambunathan N,Mahalingam R
    Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants.
    Mol. Cells, 2011. 31(1): p. 55-64
    [PMID:21120628]
  2. Le Roux C, et al.
    The hnRNP-Q protein LIF2 participates in the plant immune response.
    PLoS ONE, 2014. 9(6): p. e99343
    [PMID:24914891]
  3. Molitor AM, et al.
    The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes.
    Plant Cell, 2016. 28(9): p. 2197-2211
    [PMID:27495811]