PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G23480.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 450aa    MW: 48785.1 Da    PI: 10.0873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G23480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000824567123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++Fs+   L  H  +H
  OBART11G23480.1 45 FQCRTCGRRFSTFQALGGHRTSH 67
                     89**********99998888777 PP
2zf-C2H216.62.1e-05102124123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cgk+F +   L  H+r+H
  OBART11G23480.1 102 HRCDMCGKVFATGQALGGHMRRH 124
                      79********************9 PP
3zf-C2H211.50.0009358380123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg++F+++  L  H  +H
  OBART11G23480.1 358 FECRTCGRRFPSHQALGGHRTSH 380
                      89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.0E-94469IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8664572IPR007087Zinc finger, C2H2
SMARTSM003550.134567IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.34E-84567No hitNo description
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-897124No hitNo description
PfamPF139121.1E-11101125IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471102124IPR007087Zinc finger, C2H2
SMARTSM003550.0028102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
PfamPF139122.8E-9357382IPR007087Zinc finger, C2H2
SuperFamilySSF576679.99E-7358420No hitNo description
PROSITE profilePS5015710.325358385IPR007087Zinc finger, C2H2
SMARTSM003550.092358380IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280360380IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099398425IPR007087Zinc finger, C2H2
SMARTSM003551.1398420IPR015880Zinc finger, C2H2-like
PfamPF139128.9E-9398422IPR007087Zinc finger, C2H2
PROSITE patternPS000280400420IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEVATNTTTR SPVKLMLVLT LSPASKVIAK GGGGVKRVHL DGGAFQCRTC GRRFSTFQAL  60
GGHRTSHKRP RVRADGLDLL LGARPGKLGA GGGGGASTPV VHRCDMCGKV FATGQALGGH  120
MRRHRPLVSR NGTMSTTWTA AAAAATMSGS SSEERDDDDD DVHNYNFIHF LGDVGARLPV  180
QSDVTGDRPV TDMSLLTDVR QSGGSARLPL ATFNTARGSW GAARIDGGTA WVPPLLAPPP  240
RHMAAGRAPR GKRRKGPRAM TWHPEAPGCS RDSRDSDVFV VVTAMDQQED YTSDLQLELE  300
EEDDDNQLSQ LAELDVQLSL SLACGSTTAM SSSGDEEDAE PRRRKRRHRR RDEEAAAFEC  360
RTCGRRFPSH QALGGHRTSH LRPTTNKRRP GPSKPLIHAC EVCGLGFQMG QALGGHMRRH  420
RPRNIDLGHK QIIMPEVRPN STLQLLDLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340344PRRRK
2341349RRRKRRHRR
3343351RKRRHRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3058660.0AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616529.19e-87zinc finger protein ZAT8
TrEMBLA0A0D3HQ710.0A0A0D3HQ71_9ORYZ; Uncharacterized protein
STRINGOBART11G23480.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.17e-20C2H2 family protein