PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G20580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28846.3 Da PI: 4.9995 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.4 | 3.9e-11 | 183 | 223 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq OBART11G20580.1 183 KRRRERINERLRILQQLVPNG-----TKVDISTMLEEAVQYVKFLQ 223 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-13 | 173 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.212 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-14 | 175 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-11 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.93E-12 | 182 | 227 | No hit | No description |
Pfam | PF00010 | 2.0E-8 | 183 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDARCANIWS SADARSEESE MIDQLKSMFW SSTDAEINFY SPDSSVNSCV TTSTMPSSLF 60 LPLMDDEGFG TVQLMVSTGM DMCSDHQHQV ITGNKRMFPM DEHFEQQQKK PKKKTRTSRS 120 VSSSSTITDY ETSSELVNPS CSSGSSIGED SIAATDGSVV LKQSGNSRGH KQCSKDTQSL 180 YAKRRRERIN ERLRILQQLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDTWMFAPL 240 AYNGMNMDLG HTLAENQE |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC118346 | 0.0 | AC118346.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697725.1 | 1e-137 | PREDICTED: transcription factor bHLH139-like | ||||
Swissprot | Q84WK0 | 4e-43 | BH085_ARATH; Transcription factor bHLH85 | ||||
TrEMBL | A0A0D3HP82 | 0.0 | A0A0D3HP82_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G20580.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14002 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 1e-32 | root hair defective 6-like 4 |
Publications ? help Back to Top | |||
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