PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G14300.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 259aa    MW: 29816.5 Da    PI: 9.2378
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G14300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000276183223
                     EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                     +C+ C ++++++ +L  Hi+  H
  OBART11G14300.1 61 SCSVCWRVYPTSRLLSIHISEaH 83
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.13358IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803558IPR007087Zinc finger, C2H2
SMARTSM003557.46083IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806283IPR007087Zinc finger, C2H2
SMARTSM003550.2998123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MERELLAKQV ALDLSEDERY QLERMEVASA NALLCPISGC GAHLDCLENF EDHYRTRHTA  60
SCSVCWRVYP TSRLLSIHIS EAHDSFFQAK VARGFPMYEC LVEGCGVKLK SYKSRQQHLL  120
DKHQFPKSFE FFKKARPSQR QRNKNQKQRQ TVHKGDETSE TLMDVDGKKS SRYMNSRYRP  180
KQHDGKESKE NEHSSCKEAK NNEMEVDKQV DELASAVSRL STADSTPSSI SFGHRRSRGL  240
AFVPRSIRQN KQVSQTEPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607020.0AK060702.1 Oryza sativa Japonica Group cDNA clone:001-030-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615475.10.0zinc finger protein 511 isoform X2
TrEMBLA0A0D3HM340.0A0A0D3HM34_9ORYZ; Uncharacterized protein
STRINGOBART11G14300.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.13e-78zinc ion binding;nucleic acid binding;zinc ion binding