PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G10210.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 588aa    MW: 63197.6 Da    PI: 6.4721
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G10210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.5e-11173229155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OBART11G10210.1 173 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 229
                      57*******************4444.2455535555.779999**************98 PP
2AP251.13.3e-16272323155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  OBART11G10210.1 272 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 323
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-14173239IPR016177DNA-binding domain
CDDcd000181.04E-18173239No hitNo description
PfamPF008472.9E-8173229IPR001471AP2/ERF domain
PROSITE profilePS5103217.122174237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-11174238IPR001471AP2/ERF domain
SMARTSM003805.7E-23174243IPR001471AP2/ERF domain
PRINTSPR003672.8E-6175186IPR001471AP2/ERF domain
CDDcd000182.47E-24272333No hitNo description
SuperFamilySSF541711.05E-17272333IPR016177DNA-binding domain
PfamPF008474.1E-11272323IPR001471AP2/ERF domain
PROSITE profilePS5103218.834273331IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17273332IPR001471AP2/ERF domain
SMARTSM003806.0E-33273337IPR001471AP2/ERF domain
PRINTSPR003672.8E-6313333IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MASITNWLGF SSSSFSGAGA DPVLPHPPLQ GKTSHLMHQW GSAYEGGGTV AAAGGEETAA  60
PKLEDFLGMQ VQQETAAAAA GHGRGGSSSV VGLSMIKNWL RSQPPPAVVG GEDAMMALAV  120
STSASPPVDA TAPACISPDG MGSKAADGGG AAEAAAAAQR MKAAMDTFGQ RTSIYRGVTK  180
HRWTGRYEAH LWDNSCRREG QTRKGRQGGY DKEEKAARAY DLAALKYWGT TTTTNFPVSN  240
YEKELDEMKH MNRQEFVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY  300
LGTFGTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI IESSNLPIGT GTTRRLKDSS  360
DHTDNVMDIN VNTEPNNVVS SHFTNGVGNY GSQHYGYNGW SPISMQPIPS QYANGQPRAW  420
LKQEQDSSVV TAAQNLHNLH HFSSLGYTHN FFQQSDVPDV TGFVDAPSRS SDSYSFRYNG  480
TNGFHGLPGG ISYAMPVATA VDQGQGIHGY GEDGVAGIDT THDLYGSRNV YYLSEGSLVA  540
DVEKEGDYGQ SVGGNSWVLP TPESEMVEKA DNVTVCHGMP LFSVWNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876210.0AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876947.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-125BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0D3HKS20.0A0A0D3HKS2_9ORYZ; Uncharacterized protein
STRINGOBART11G10210.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-116AP2 family protein