PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G02410.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 529aa    MW: 55674 Da    PI: 4.7868
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G02410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS217.85.4e-671744461266
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL++cA+av+sg+ + a +lL+++++++sp+gd+++Rla+yf+  L+arla+   +l + l +s+++  +  e l a+++f  ++ +  ++
  OBART11G02410.1 174 LRELLMSCAQAVASGKRRSAGELLEQIKQHSSPAGDTTERLAHYFADDLEARLAG-AASLEHRLLASAER-ASAMELLEAYQVFMAACCFKWVA 265
                      689****************************************************.77777777666665.579999***************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +  aN aIl+a+eg ++vHi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f+++++ r
  OBART11G02410.1 266 FTFANMAILRAAEGRSKVHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPSPGfrPARRLERTGRRLSNCARAFGLPFKFRAVAVAR 359
                      ***********************86538*******************************9********************************** PP

             GRAS 186 ledleleeL...rvkp.gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                      +e+++ e+     v+p +Ea++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++sa
  OBART11G02410.1 360 WETVTAEDVvggGVDPdEEAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSA 446
                      *********8888999999*****************98877779****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.344148529IPR005202Transcription factor GRAS
PfamPF035141.9E-64174446IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MGPAAPPSEA AAAADDVVLP YISRILMEED MDDDVFFCLY PDHPALLEAQ QPFAQILSSS  60
SGIAGELNSA AMEDSAALMM QGSGNGRGRK GSKHGGDELE AEVGRASKLM ATLEEEEDDD  120
DGVGEMLEKM MLNGDEDEAF HGETNAPRVP AEKKGGKPAP RRRRRQGKGE VVDLRELLMS  180
CAQAVASGKR RSAGELLEQI KQHSSPAGDT TERLAHYFAD DLEARLAGAA SLEHRLLASA  240
ERASAMELLE AYQVFMAACC FKWVAFTFAN MAILRAAEGR SKVHIVDYGG QYHGLQWPSL  300
LQRLAEREGG PPEVRMTLVG HPSPGFRPAR RLERTGRRLS NCARAFGLPF KFRAVAVARW  360
ETVTAEDVVG GGVDPDEEAV VVNDVLSLGT LMDESGVFDD PSPRDTVLGS IRDMRPAVFV  420
QAVVNGAHGA PFFPTRFREA LFFFSARHAG RDDAGGGEPP AGGAGEGRAE AGGGGGDRRG  480
RGGAGGAAGD VQAVAGEESA GGAEAGGGGG RRGGGGEAQG EEAASRRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2518144626272Protein SCARECROW
5b3h_A4e-2518144625271Protein SCARECROW
5b3h_D4e-2518144625271Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1508515GGRRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLA0A0D3HHZ70.0A0A0D3HHZ7_9ORYZ; Uncharacterized protein
STRINGOBART11G02410.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.18e-74SCARECROW-like 14