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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART10G16620.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 321aa MW: 35105.1 Da PI: 5.0036 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART10G16620.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 159.6 | 1.2e-49 | 8 | 125 | 1 | 122 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
+ppGfrFhPtdeelv +yL+kkv+++k++l +vi++vd+y++ePwdL+ ++e++ewyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+v +
OBART10G16620.1 8 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDVDLYRIEPWDLQ--GYEEQSEWYFFSYKDRKYPTGTRTNRATMTGFWKATGRDKAVRE 98
69****************************.9***************8..345789*************************************9 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWv 122
+++l+g++ktLvfykgrap+g+ktdW+
OBART10G16620.1 99 -RSRLIGMRKTLVFYKGRAPNGHKTDWI 125
.999***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MVIMESCVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDVDLYRIEP WDLQGYEEQS 60
EWYFFSYKDR KYPTGTRTNR ATMTGFWKAT GRDKAVRERS RLIGMRKTLV FYKGRAPNGH 120
KTDWIEEGWV VCRAFKKRTM QPPRSSIGAW EASYSYHDPA VFVGGGEHFK QVAAAELDGV 180
AAAAGANAFL RYSTRLAELP QLESPPLPSQ GSQAASAVVD GEEDNADSSR RPGGGGGAAA 240
AVTTDWRAFD KFVASQLSPE EQHTCRATDD DDMAALLLLD GGGQEDDAGR WLGSAGLLSA 300
VAADATTDCG LGTSCVPGDI N
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC092389 | 0.0 | AC092389.4 Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence. |
| GenBank | AC113948 | 0.0 | AC113948.5 Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence. |
| GenBank | AK106313 | 0.0 | AK106313.1 Oryza sativa Japonica Group cDNA clone:002-101-D07, full insert sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | JN634073 | 0.0 | JN634073.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 4 mRNA, complete cds. |
