PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G13430.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 853aa    MW: 93875.3 Da    PI: 5.8444
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G13430.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-1842100357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      k  ++t+eq+e+Le++++++++ps ++r++L + +    +++ +q+kvWFqNrR ++k+
  OBART10G13430.2  42 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCpilaNIEPKQIKVWFQNRRCRDKQ 100
                      5678****************************************************996 PP
2START159.23.2e-501803872204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+      g  g+++l
  OBART10G13430.2 180 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIEL 272
                      7899******************************************************9999999999.***********999999999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+
  OBART10G13430.2 273 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 366
                      ***************************************9999998888899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+++a+l++ +
  OBART10G13430.2 367 LYESSRVVAQKMTTAALRHIR 387
                      *****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-182297IPR009057Homeodomain-like
PROSITE profilePS5007115.43537101IPR001356Homeobox domain
SMARTSM003891.1E-1539105IPR001356Homeobox domain
SuperFamilySSF466894.15E-1641105IPR009057Homeodomain-like
CDDcd000863.70E-1642102No hitNo description
PfamPF000465.0E-1643100IPR001356Homeobox domain
CDDcd146862.47E-694133No hitNo description
Gene3DG3DSA:1.20.5.1704.6E-498148No hitNo description
PROSITE profilePS5084827.397170398IPR002913START domain
CDDcd088751.36E-72174390No hitNo description
SMARTSM002343.5E-37179389IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-21179365IPR023393START-like domain
PfamPF018524.0E-48180387IPR002913START domain
SuperFamilySSF559611.51E-36180391No hitNo description
PfamPF086704.1E-49710852IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MAAAAPLWWW WRRMAAAVAM RSGSGSDGGG GGYDKAGMDS GKYVRYTPEQ VEALERVYAE  60
CPKPSSSRRQ QLLRDCPILA NIEPKQIKVW FQNRRCRDKQ RKEASRLQAV NRKLTAMNKL  120
LMEENERLQK QVSQLVHENA YMKQQLQNPS LGNDTSCESN VTTPQNPLRD ASNPSGLLTI  180
AEETLTEFLS KATGTAVDWV PMPGMKPGPD SFGIVAVSHG CRGVAARACG LVNLEPTKIV  240
EILKDRPSWF RDCRSLEVFT MFPAGNGGTI ELVYMQMYAP TTLVPARDFW TLRYTTTMED  300
GSLVVCERSL SGSGGGPSTA SAQQFVRAEM LPSGYLVRPC EGGGSIVHIV DHLDLEAWSV  360
PEVLRPLYES SRVVAQKMTT AALRHIRQIA QETSGEVVYA LGRQPAVLRT FSQRLSRGFN  420
DAISGFNDDG WSVMGGDGIE DVIIACNAKK VRNTSTSANA FVTPGGVICA KASMLLQSVP  480
PAVLVRFLRE HRSEWADYNF DAYSASSLKT SSCSLPGLRP MRFSGSQIIM PLAHTVENEE  540
ILEVVRLEGQ ALTHDDGLMS RDIHLLQLCT GIDEKSMGSC FQLVFAPIDE LFPDDAPLIS  600
SGFRVIPLDM KTDGTPAGRT LDLASSLEVG STAQPTGDAS MDDCNLRSVL TIAFQFPYEM  660
HLQDSVATMA RQYVRSIVSS VQRVSMAISP SRSGLNAGQK IISGFPEAPT LARWICQSYQ  720
FHLGVELLRQ ADDAGEALLK MLWDYEDAIL CCSFKEKPVF TFANEMGLNM LETSLVALQD  780
LSLDKIFDEA GRKALYNEIP KLMEQGYVYL PGGVCLSGMG RHVSFEQAVA WKVLGEDNNV  840
HCLAFCFVNW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1028300.0AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614901.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A0D3HET00.0A0A0D3HET0_9ORYZ; Uncharacterized protein
STRINGOBART10G13430.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein