PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G09840.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 412aa    MW: 44029 Da    PI: 6.4287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G09840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.33.4e-24221492127
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya...tgkrknratksgyWkatgk 88 
                      p+GfrF P+d+el+ + L  k++g +    l+ v+++++i++++P +L  + ++ ee+  +yfFs+ + k+a   ++k ++ra++ g+Wka   
  OBART10G09840.1  22 PRGFRFVPRDQELL-DILDDKLRGAPldRALDAVFHDTRILDFHPAKLYgMYAEDEENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKAVLG 114
                      89************.88*********53333456**************83344444443459**998777663335778899********8866 PP

              NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      + ++++ +g  vg k ++ fy     kg++t+W mhe+ 
  OBART10G09840.1 115 SSQMVEVGGVPVGRKLSMEFY----VKGVRTNWGMHEFV 149
                      6666666**************....899*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3016167IPR003441NAC domain
PROSITE profilePS5100524.92621169IPR003441NAC domain
PfamPF023652.0E-1222148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAAPGDGEEK KAGSGRNKHG FPRGFRFVPR DQELLDILDD KLRGAPLDRA LDAVFHDTRI  60
LDFHPAKLYG MYAEDEENGY IYFFSTIEFK AAKPKQKKWP RRAAQGGRWK AVLGSSQMVE  120
VGGVPVGRKL SMEFYVKGVR TNWGMHEFVR IIGPNIEVAD LAVYRLHKLW TNGEEKPGDL  180
AADVAKSTNQ SGQASAADYY QTYQNAVSQA YAYAPPYVLQ PGWSQGYPYD VAAAPPTAPW  240
PVCWAPPSAP GSYDCCYAST FSRPPPPPPI AASTLDKAPI TSTDHGASTN TSAATPAANN  300
KPPPPPVAAT ATTLGKKGEG KGKAPTTTST DHAGSTNTSA PPAANYQPPP LQGTQHVFAS  360
GVVIGHEDEE GYLVVDEVNT WRNTQQLVLE DDDDGRAAVA GAGEGGASAS GR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099040.0AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.10.0uncharacterized protein LOC4348616
TrEMBLA0A0D3HDM20.0A0A0D3HDM2_9ORYZ; Uncharacterized protein
STRINGOBART10G09840.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-11NAC domain containing protein 3