PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART10G09210.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 837aa MW: 89460.6 Da PI: 4.6655

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART10G09210.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	75.6	1.2e-23	331	489	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk.......................kvka.eekewyfFskr..dkk 67 +p+Gf F P+d el ++k v+g+ + ++v+++++i++++P L+ +++ e+ +yfFs+r + k OBART10G09210.1 331 MPVGFYFVPKDLELFAILMCKLVRGEVPGAlNNVFEHIRILEFHPALLRVaitedlkpcsslssspamacaetYIENiEDGCIYFFSRRlfAAK 424 699*************9999999996551456999*********8458999*9999999887765333323335599999844466 PP NAM 68 yatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 +++++r+ r+++ g+Wka+g +k+v sk +g +vg k t+vfy + +++++kt+W mhey+ OBART10G09210.1 425 ARNKRRPMRVANGGTWKASGGSKTVRSKkvGGIDVGQKLTMVFYerrFEGDQNPVKTNWAMHEYT 489 66899*****************99888899******44313466779*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-26	326	498	IPR003441	NAC domain
PROSITE profile	PS51005	28.059	331	509	IPR003441	NAC domain
Pfam	PF02365	2.3E-13	332	489	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MHEFTKIIDD SKNQKPGRRT KRIGERCRRG VDEPSTSSAL PPPTPPRPLP DMAGQSSATP 60 LLPLQLLGLA GSSSAMSLPV LQLPGMAGSS SAMPLQLSLP GLAGEMMSMA DQANMASTSQ 120 ASTPSSELLQ DWYDEFEITY GAVTPPSPST ISWEAPQSSP MGWWPSPNGG LVQHDGYLRM 180 AADPTWYMLE HLLPTAAIPP EPMMPPTSSP APPPAVDHHH RLSPPHDAAG SNYNHPKLAG 240 YNGGIQAQHE NQHHPQEPQP ALLVDGEDGY GAMADSNDTQ LGGTEFDTER IAEMQPADGD 300 GGGSGGSNNN NGKLKGKEKV VPEYGKNRHG MPVGFYFVPK DLELFAILMC KLVRGEVPGA 360 LNNVFEHIRI LEFHPALLRV AITEDLKPCS SLSSSPAMAC AETYIENIED GCIYFFSRRL 420 FAAKARNKRR PMRVANGGTW KASGGSKTVR SKKVGGIDVG QKLTMVFYER RFEGDQNPVK 480 TNWAMHEYTK IIPGSKNQGV FMIKRIDRIQ FVLIWLDKLI LWILDKLEDL AVYRLYKIRR 540 KEDTEPVNAA AAASSTDKPS TPAALPPPTP PPRPLLDMAG SSSATSLLPP QLPGLAGSSS 600 TMPLALPLQL PGLPRSSSVM SLPGLAGEMT SMGHGETGEH GLDASTPSSE LPQDWYDEYE 660 VAYGAVAPPA PSTISWAALP SSPMAWWPPS NGGPVQHDGY LGMADPASAA IPPEPMAPPK 720 NSPAAPPPAD AGGNYDHPEL ADYGGSVQAQ HEHHQPQELT DGADGDAQLE LGAAEFDSER 780 VAEMISQIMD GEFVFKFEDD TIVSFNEVAA APMLIDGGGD GDGDGADGGV GDDPFDN

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MHEFTKIIDD SKNQKPGRRT KRIGERCRRG VDEPSTSSAL PPPTPPRPLP DMAGQSSATP  60
LLPLQLLGLA GSSSAMSLPV LQLPGMAGSS SAMPLQLSLP GLAGEMMSMA DQANMASTSQ  120
ASTPSSELLQ DWYDEFEITY GAVTPPSPST ISWEAPQSSP MGWWPSPNGG LVQHDGYLRM  180
AADPTWYMLE HLLPTAAIPP EPMMPPTSSP APPPAVDHHH RLSPPHDAAG SNYNHPKLAG  240
YNGGIQAQHE NQHHPQEPQP ALLVDGEDGY GAMADSNDTQ LGGTEFDTER IAEMQPADGD  300
GGGSGGSNNN NGKLKGKEKV VPEYGKNRHG MPVGFYFVPK DLELFAILMC KLVRGEVPGA  360
LNNVFEHIRI LEFHPALLRV AITEDLKPCS SLSSSPAMAC AETYIENIED GCIYFFSRRL  420
FAAKARNKRR PMRVANGGTW KASGGSKTVR SKKVGGIDVG QKLTMVFYER RFEGDQNPVK  480
TNWAMHEYTK IIPGSKNQGV FMIKRIDRIQ FVLIWLDKLI LWILDKLEDL AVYRLYKIRR  540
KEDTEPVNAA AAASSTDKPS TPAALPPPTP PPRPLLDMAG SSSATSLLPP QLPGLAGSSS  600
TMPLALPLQL PGLPRSSSVM SLPGLAGEMT SMGHGETGEH GLDASTPSSE LPQDWYDEYE  660
VAYGAVAPPA PSTISWAALP SSPMAWWPPS NGGPVQHDGY LGMADPASAA IPPEPMAPPK  720
NSPAAPPPAD AGGNYDHPEL ADYGGSVQAQ HEHHQPQELT DGADGDAQLE LGAAEFDSER  780
VAEMISQIMD GEFVFKFEDD TIVSFNEVAA APMLIDGGGD GDGDGADGGV GDDPFDN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC092388	0.0	AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence.
GenBank	AC122144	0.0	AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651177.1	0.0	NAC transcription factor NAM-B2 isoform X1
TrEMBL	A0A0D3HDE7	0.0	A0A0D3HDE7_9ORYZ; Uncharacterized protein
STRING	OBART10G09210.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3563	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	1e-10	NAC domain containing protein 3