PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G08900.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 266aa    MW: 30555.2 Da    PI: 10.8211
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G08900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM835.9e-26411771127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                      +p Gf F P+d el++  ++k v+gk   + ++v+k+++i++++P  L+ + +++ e+  +yfFskr+ +++  +++++ r++++g+Wka+g +
  OBART10G08900.1  41 MPIGFYFIPKDLELLTILMCKLVRGKVPGAlNNVFKHIRILEFHPALLHeTYIETMEDgYIYFFSKRQFATKarNKRQPMRVADDGTWKASGGS 134
                      699**********************996551456**************8455655444366****99865443378889999************ PP

              NAM  90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      k+v sk  +g +vg k t+vfy    + +++++kt+W +he++
  OBART10G08900.1 135 KTVRSKkvGGIDVGQKFTMVFYerrFEGDRNPVKTNWGIHEFT 177
                      ****99888899**********43313466778********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3436201IPR003441NAC domain
PROSITE profilePS5100531.38941198IPR003441NAC domain
PfamPF023657.5E-1342177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRTAAGAWG QRRQRWKQQQ RWKWKGKEKV VPEYGKNRHG MPIGFYFIPK DLELLTILMC  60
KLVRGKVPGA LNNVFKHIRI LEFHPALLHE TYIETMEDGY IYFFSKRQFA TKARNKRQPM  120
RVADDGTWKA SGGSKTVRSK KVGGIDVGQK FTMVFYERRF EGDRNPVKTN WGIHEFTKII  180
PGTKNQLEDL AVYRVYKIRR KEDTEPVNAA AAVSSTDEPS TPAALPLPTP PPRPLPDMAG  240
SSSATRLMPS PQICRPHHTT REHRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221441e-136AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149661e-136AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.11e-126NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0D3HDB10.0A0A0D3HDB1_9ORYZ; Uncharacterized protein
STRINGOBART10G08900.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.13e-14NAC domain containing protein 3