PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 200aa MW: 21168.8 Da PI: 4.5786

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART10G08140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	36	87	3	54
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 k++++ +eq+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa OBART10G08140.1 36 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRAS 87 4557899*******************************************95 PP
2	HD-ZIP_I/II	82.6	5.9e-27	35	87	1	53
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 ekkrrl++eqv++LE+sFe+++kL+perK+++ar+L+l+prqvavWFqnrRA OBART10G08140.1 35 EKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRAS 87 69*************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-17	23	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.92E-15	28	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.625	31	91	IPR001356	Homeobox domain
SMART	SM00389	3.9E-15	34	95	IPR001356	Homeobox domain
Pfam	PF00046	6.4E-15	36	87	IPR001356	Homeobox domain
CDD	cd00086	2.35E-15	36	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MRSYMDGGGA AAYEEEEEEV EDDDGGGGGG GGLGEKKRRL AAEQVRALER SFEADNKLDP 60 ERKARIARDL RLHPRQVAVW FQNRRASKVV DGSTDSDSSA VFNEEASPYS GAAIDHHHHQ 120 TPASYDTAGF TSFFAPSTTL TSSLSFPSMF HASSHFDGHQ ELLVGGGGAG AVADADLGGA 180 GFFAGDEHAG GLSWYGAEGW

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837733	0.0	CT837733.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA016M03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613231.1	8e-65	homeobox-leucine zipper protein HOX8
Swissprot	Q338Z7	7e-66	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	A0A0D3HD24	1e-141	A0A0D3HD24_9ORYZ; Uncharacterized protein
STRING	OBART10G08140.1	1e-142	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	5e-21	homeobox protein 5

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]