 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART10G08120.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 393aa MW: 41188.2 Da PI: 6.3793 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART10G08120.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 46.3 | 7.4e-15 | 174 | 225 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+++L+
OBART10G08120.1 174 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 225
79****************************...*******************995 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MALEAVVYSH GGHFGGYGGG LMGGAPAAPW DVFAAAAAGG GGSWDDPGLF AAEASLDVIQ 60 GVDEWEVDQD QHASSSSKVA ARPPAVLLSR GDLFGRRRCA MEGGGGGGGG GGWSSPFSGF 120 EGVMDLDGGN WDAAACSSML LHGFQEIEIP AAAAGKRKRR RAKAAKNREE IESQRMTHIA 180 VERNRRRQMN EYLAVLRSLM PPSYAQRGDQ ASIVGGAINY VRELEQLLQT LEARRTIKDH 240 IDGGAGESPS PFAGFFAFPQ YSTATSGHGG GGDAHSRIVV KPAETTTTAA GGGAGAAIAD 300 IEASMVEGHA SVKVQARRRP RQLLKLVAGL HQLGLTTLHL NVTTVAAMAM YSFSLKVEDG 360 CKLGSVEEIA TAVHEILERM QEEQAFADAK TSL
|
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 155 | 160 | KRKRRR |
2 | 156 | 160 | RKRRR |
3 | 174 | 185 | RMTHIAVERNRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK058809 | 0.0 | AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence. |